1 Response_reg#1
5-114 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:5:7.33e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SCQ_RS14735
Response regulator OmpR family
Enterococcus faecalis EnGen0116 · GCF_000391685
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000391685#SCQ_RS14735Stable P2CS identifier used across views.
GenomeGCF_000391685Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:156:1.21e-30:233:78:77- Raw architecture: Response_reg:5:7.33e-32:114:111:111#Trans_reg_C:156:1.21e-30:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000391685::NZ_KB932593.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1454675-1456484Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSCQ_02314RefSeq proteinWP_002356311.1
Context group ID
GCF_000391685::NZ_KB932593.1::G00016Context members
SCQ_RS14730SCQ_RS14735
Partner locus tags
SCQ_RS14730SCQ_RS14735
Partner old locus tags
SCQ_02313SCQ_02314
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002356311.1Primary protein accession used for annex mappings.
UniProt accessionA0A125W8L8Primary UniProt accession resolved in the annex database.
UniProt IDA0A125W8L8_ENTFLDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSCQ_RS14735Primary locus identifier stored in the genes table.
Old locus tagSCQ_02314Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB932593.1Sequence record reported by the local genomic context database.
Genomic interval1 455 780-1 456 484 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 454 675-1 456 484 ntGCF_000391685::NZ_KB932593.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000391685::NZ_KB932593.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB932593.1All displayed genes belong to this local TCS context.
Neighborhood span1 454 675-1 456 484 nt1 810 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 454 675 nt1 456 484 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SCQ_RS14730GCF_000391685#SCQ_RS14730
HKClassic
1 454 675-1 455 787 nt · Reverse (-)
SCQ_RS14735GCF_000391685#SCQ_RS14735
RROmpRCurrent focus
1 455 780-1 456 484 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS04290Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047355
Simplified PFAM architecture for RROC_1047355
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1047355
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS04290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 157 375 · GCF_000391685
AssemblyEnte_faec_UAA906_V1 · Scaffoldhaploid
Genome composition2 872 691 bp · 37,5% GCEnterococcus faecalis EnGen0116
Signal transduction countsGenes 35 · HK 16 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key