1 HAMP#1
288-360 aa · 73 aa · 12.7% of protein
Raw token
HAMP:288:0.0000000815:360:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SCQ_RS12650
Histidine kinase, Classic
Enterococcus faecalis EnGen0116 · GCF_000391685
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000391685#SCQ_RS12650Stable P2CS identifier used across views.
GenomeGCF_000391685Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 576 aa (45.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
375-453 aa · 79 aa · 13.7% of protein
Raw token
His_kinase:375:8.06e-28:453:80:803 HATPase_c#3
464-574 aa · 111 aa · 19.3% of protein
Raw token
HATPase_c:464:0.00000000000865:574:113:109- Raw architecture: HAMP:288:0.0000000815:360:73:69#His_kinase:375:8.06e-28:453:80:80#HATPase_c:464:0.00000000000865:574:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000391685::NZ_KB932593.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1005330-1008553Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSCQ_01904RefSeq proteinWP_002403068.1
Context group ID
GCF_000391685::NZ_KB932593.1::G00015Context members
SCQ_RS12645SCQ_RS12650
Partner locus tags
SCQ_RS12645SCQ_RS12650
Partner old locus tags
SCQ_01903SCQ_01904
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002403068.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSCQ_RS12650Primary locus identifier stored in the genes table.
Old locus tagSCQ_01904Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB932593.1Sequence record reported by the local genomic context database.
Genomic interval1 006 823-1 008 553 nt1 731 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 005 330-1 008 553 ntGCF_000391685::NZ_KB932593.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000391685::NZ_KB932593.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB932593.1All displayed genes belong to this local TCS context.
Neighborhood span1 005 330-1 008 553 nt3 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 005 330 nt1 008 553 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SCQ_RS12645GCF_000391685#SCQ_RS12645
RRunclassified
1 005 330-1 006 811 nt · Reverse (-)
SCQ_RS12650GCF_000391685#SCQ_RS12650
HKClassicCurrent focus
1 006 823-1 008 553 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148045#HMPREF9514_RS09190Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1182892
Simplified PFAM architecture for HKOC_1182892
PFAM domain coverage: 180 / 576 aa (31.3%)
1 aa576 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[375-453] | HATPase_c[474-574]
- Domain count: 2
- Matched identifier: HKOC_1182892
- Positioned domains: His_kinase 375-453 ; HATPase_c 474-574
Cluster members and taxonomy
Representative gene: GCF_000148045#HMPREF9514_RS09190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 157 375 · GCF_000391685
AssemblyEnte_faec_UAA906_V1 · Scaffoldhaploid
Genome composition2 872 691 bp · 37,5% GCEnterococcus faecalis EnGen0116
Signal transduction countsGenes 35 · HK 16 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key