1 Response_reg#1
3-113 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:3:8.38e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q9M_RS04835
Response regulator OmpR family
Enterococcus faecalis EnGen0058 · GCF_000390705
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000390705#Q9M_RS04835Stable P2CS identifier used across views.
GenomeGCF_000390705Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 239 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-233 aa · 70 aa · 29.3% of protein
Raw token
Trans_reg_C:164:5.79e-37:233:72:77- Raw architecture: Response_reg:3:8.38e-28:113:111:111#Trans_reg_C:164:5.79e-37:233:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000390705::NZ_KB932356.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span241294-243482Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQ9M_00259RefSeq proteinWP_010709366.1
Context group ID
GCF_000390705::NZ_KB932356.1::G00003Context members
Q9M_RS04835Q9M_RS04840
Partner locus tags
Q9M_RS04835Q9M_RS04840
Partner old locus tags
Q9M_00259Q9M_00260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_010709366.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7J2A0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7J2A0_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ9M_RS04835Primary locus identifier stored in the genes table.
Old locus tagQ9M_00259Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB932356.1Sequence record reported by the local genomic context database.
Genomic interval241 294-242 013 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span241 294-243 482 ntGCF_000390705::NZ_KB932356.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000390705::NZ_KB932356.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB932356.1All displayed genes belong to this local TCS context.
Neighborhood span241 294-243 482 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
241 294 nt243 482 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q9M_RS04835GCF_000390705#Q9M_RS04835
RROmpRCurrent focus
241 294-242 013 nt · Forward (+)
Q9M_RS04840GCF_000390705#Q9M_RS04840
HKClassic
242 013-243 482 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147475#HMPREF9518_RS13655Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905557
Simplified PFAM architecture for RROC_0905557
PFAM domain coverage: 182 / 239 aa (76.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-114] | Trans_reg_C[164-233]
- Domain count: 2
- Matched identifier: RROC_0905557
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; Trans_reg_C 164-233 ; Trans_reg_C 164-233
Cluster members and taxonomy
Representative gene: GCF_000147475#HMPREF9518_RS13655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 196 · GCF_000390705
AssemblyEnte_faec_2630V05_V1 · Scaffoldhaploid
Genome composition3 063 175 bp · 37,5% GCEnterococcus faecalis EnGen0058
Signal transduction countsGenes 34 · HK 16 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key