1 Response_reg#1
3-108 aa · 106 aa · 53.8% of protein
Raw token
Response_reg:3:9.58e-20:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q9A_RS08985
Response regulator NarL family
Enterococcus faecalis EnGen0066 · GCF_000390585
ClassRRTypeNarLLength197 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000390585#Q9A_RS08985Stable P2CS identifier used across views.
GenomeGCF_000390585Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length197 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 197 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa197 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
129-186 aa · 58 aa · 29.4% of protein
Raw token
HTH_LUXR:129:7.31e-18:186:58:58- Raw architecture: Response_reg:3:9.58e-20:108:106:111#HTH_LUXR:129:7.31e-18:186:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000390585::NZ_KB932331.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1119552-1120145Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQ9A_01112RefSeq proteinWP_010708851.1
Context group ID
GCF_000390585::NZ_KB932331.1::G00008Context members
Q9A_RS08985
Partner locus tags
Q9A_RS08985
Partner old locus tags
Q9A_01112
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_010708851.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ9A_RS08985Primary locus identifier stored in the genes table.
Old locus tagQ9A_01112Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB932331.1Sequence record reported by the local genomic context database.
Genomic interval1 119 552-1 120 145 nt594 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 119 552-1 120 145 ntGCF_000390585::NZ_KB932331.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000390585::NZ_KB932331.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB932331.1All displayed genes belong to this local TCS context.
Neighborhood span1 119 552-1 120 145 nt594 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 119 552 nt1 120 145 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Q9A_RS08985GCF_000390585#Q9A_RS08985
RRNarLCurrent focus
1 119 552-1 120 145 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000390585#Q9A_RS08985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2152277
Simplified PFAM architecture for RROC_2152277
PFAM domain coverage: 164 / 197 aa (83.2%)
1 aa197 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-111] | GerE[130-184]
- Domain count: 2
- Matched identifier: RROC_2152277
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; GerE 130-184 ; GerE 130-184
Cluster members and taxonomy
Representative gene: GCF_000390585#Q9A_RS08985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 190 · GCF_000390585
AssemblyEnte_faec_B84847_V1 · Scaffoldhaploid
Genome composition2 892 356 bp · 37,5% GCEnterococcus faecalis EnGen0066
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key