1 KdpD#1
21-230 aa · 210 aa · 23.6% of protein
Raw token
KdpD:21:1.99e-117:230:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H643_RS00305
Histidine kinase, Classic
Francisella tularensis subsp. tularensis 1378 · GCF_000380385
ClassHKTypeClassicLength889 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000380385#H643_RS00305Stable P2CS identifier used across views.
GenomeGCF_000380385Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length889 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage384 / 889 aa (43.2%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa889 aa
Domain-by-domain annotation3 items
2 HisKA#2
668-728 aa · 61 aa · 6.9% of protein
Raw token
HisKA:668:0.0000000000000664:728:61:643 HATPase_c#3
773-885 aa · 113 aa · 12.7% of protein
Raw token
HATPase_c:773:3.56e-27:885:113:109- Raw architecture: KdpD:21:1.99e-117:230:210:210#HisKA:668:0.0000000000000664:728:61:64#HATPase_c:773:3.56e-27:885:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000380385::NZ_APKY01000012.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span22781-25450Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH643_09889RefSeq proteinWP_004578647.1
Context group ID
GCF_000380385::NZ_APKY01000012.1::G00004Context members
H643_RS00305
Partner locus tags
H643_RS00305
Partner old locus tags
H643_09889
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004578647.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH643_RS00305Primary locus identifier stored in the genes table.
Old locus tagH643_09889Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_APKY01000012.1Sequence record reported by the local genomic context database.
Genomic interval22 781-25 450 nt2 670 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 781-25 450 ntGCF_000380385::NZ_APKY01000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000380385::NZ_APKY01000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_APKY01000012.1All displayed genes belong to this local TCS context.
Neighborhood span22 781-25 450 nt2 670 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 781 nt25 450 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H643_RS00305GCF_000380385#H643_RS00305
HKClassicCurrent focus
22 781-25 450 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000380385#H643_RS00305The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0429602
Simplified PFAM architecture for HKOC_0429602
PFAM domain coverage: 484 / 889 aa (54.4%)
1 aa889 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[21-230] | DUF4118[406-503] | HisKA[666-728] | HATPase_c[773-885]
- Domain count: 4
- Matched identifier: HKOC_0429602
- Positioned domains: KdpD 21-230 ; DUF4118 406-503 ; HisKA 666-728 ; HATPase_c 773-885
Cluster members and taxonomy
Representative gene: GCF_000380385#H643_RS00305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 292 389 · GCF_000380385
AssemblyH643_1.0 · Contighaploid
Genome composition1 815 365 bp · 32,5% GCFrancisella tularensis subsp. tularensis 1378
Signal transduction countsGenes 5 · HK 2 · RR 3CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key