1 Response_reg#1
3-113 aa · 111 aa · 50.0% of protein
Raw token
Response_reg:3:1.1e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A1SA_RS15820
Response regulator OmpR family
Escherichia coli KTE51 · GCF_000351465
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000351465#A1SA_RS15820Stable P2CS identifier used across views.
GenomeGCF_000351465Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 222 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 32.4% of protein
Raw token
Trans_reg_C:145:2.99e-25:216:77:77- Raw architecture: Response_reg:3:1.1e-36:113:111:111#Trans_reg_C:145:2.99e-25:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000351465::NZ_KB732658.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122114-123883Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA1SA_00222RefSeq proteinWP_000697915.1
Context group ID
GCF_000351465::NZ_KB732658.1::G00009Context members
A1SA_RS15825A1SA_RS15820
Partner locus tags
A1SA_RS15825A1SA_RS15820
Partner old locus tags
A1SA_00221A1SA_00222
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000697915.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FHZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FHZ4_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA1SA_RS15820Primary locus identifier stored in the genes table.
Old locus tagA1SA_00222Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB732658.1Sequence record reported by the local genomic context database.
Genomic interval123 215-123 883 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span122 114-123 883 ntGCF_000351465::NZ_KB732658.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000351465::NZ_KB732658.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB732658.1All displayed genes belong to this local TCS context.
Neighborhood span122 114-123 883 nt1 770 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 114 nt123 883 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A1SA_RS15825GCF_000351465#A1SA_RS15825
HKClassic
122 114-123 214 nt · Reverse (-)
A1SA_RS15820GCF_000351465#A1SA_RS15820
RROmpRCurrent focus
123 215-123 883 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006665#Z_RS26740Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637274
Simplified PFAM architecture for RROC_1637274
PFAM domain coverage: 183 / 222 aa (82.4%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1637274
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_000006665#Z_RS26740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 182 658 · GCF_000351465
AssemblyEsch_coli_KTE51_V1 · Scaffoldhaploid
Genome composition5 276 796 bp · 50,5% GCEscherichia coli KTE51
Signal transduction countsGenes 62 · HK 31 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key