1 Response_reg#1
5-115 aa · 111 aa · 35.4% of protein
Raw token
Response_reg:5:1.3e-22:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H175_RS12420
Response regulator, unclassified
Bacillus thuringiensis serovar thuringiensis str. IS5056 · GCF_000341665
ClassRRTypeunclassifiedLength314 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000341665#H175_RS12420Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length314 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage249 / 314 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa314 aa
Domain-by-domain annotation2 items
2 YcbB#2
165-302 aa · 138 aa · 43.9% of protein
Raw token
YcbB:165:2.06e-61:302:138:131- Raw architecture: Response_reg:5:1.3e-22:115:112:111#YcbB:165:2.06e-61:302:138:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000341665::NC_020376.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2467655-2468599Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH175_ch2464RefSeq proteinWP_000274088.1
Context group ID
GCF_000341665::NC_020376.1::G00028Context members
H175_RS12420
Partner locus tags
H175_RS12420
Partner old locus tags
H175_ch2464
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000274088.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3HQR8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3HQR8_BACTIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH175_RS12420Primary locus identifier stored in the genes table.
Old locus tagH175_ch2464Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_020376.1Sequence record reported by the local genomic context database.
Genomic interval2 467 655-2 468 599 nt945 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 467 655-2 468 599 ntGCF_000341665::NC_020376.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000341665::NC_020376.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_020376.1All displayed genes belong to this local TCS context.
Neighborhood span2 467 655-2 468 599 nt945 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 467 655 nt2 468 599 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H175_RS12420GCF_000341665#H175_RS12420
RRunclassifiedCurrent focus
2 467 655-2 468 599 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021305#BCG9842_RS15320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0541856
Simplified PFAM architecture for RROC_0541856
PFAM domain coverage: 248 / 314 aa (79.0%)
1 aa314 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[4-114] | YcbB[166-302]
- Domain count: 2
- Matched identifier: RROC_0541856
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; YcbB 166-302 ; YcbB 166-302
Cluster members and taxonomy
Representative gene: GCF_000021305#BCG9842_RS15320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 286 404 · GCF_000341665
AssemblyASM34166v1 · Complete Genomehaploid
Genome composition6 771 593 bp · 35,0% GCBacillus thuringiensis serovar thuringiensis str. IS5056
Signal transduction countsGenes 114 · HK 62 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key