1 HAMP#1
140-207 aa · 68 aa · 15.7% of protein
Raw token
HAMP:140:0.0000000351:207:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECK4_RS07820
Histidine kinase, Classic
Escherichia coli O5:K4(L):H4 str. ATCC 23502 · GCF_000333195
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000333195#ECK4_RS07820Stable P2CS identifier used across views.
GenomeGCF_000333195Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 433 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 HisKA#2
211-269 aa · 59 aa · 13.6% of protein
Raw token
HisKA:211:0.000000000298:269:62:643 HATPase_c#3
316-423 aa · 108 aa · 24.9% of protein
Raw token
HATPase_c:316:5.49e-28:423:109:109- Raw architecture: HAMP:140:0.0000000351:207:72:69#HisKA:211:0.000000000298:269:62:64#HATPase_c:316:5.49e-28:423:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000333195::NZ_CAPL01000086.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8318-10342Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECK4_29560RefSeq proteinWP_000732510.1
Context group ID
GCF_000333195::NZ_CAPL01000086.1::G00011Context members
ECK4_RS07820ECK4_RS07815
Partner locus tags
ECK4_RS07820ECK4_RS07815
Partner old locus tags
ECK4_29560ECK4_29570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000732510.1Primary protein accession used for annex mappings.
UniProt accessionW8T9Y2Primary UniProt accession resolved in the annex database.
UniProt IDW8T9Y2_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECK4_RS07820Primary locus identifier stored in the genes table.
Old locus tagECK4_29560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAPL01000086.1Sequence record reported by the local genomic context database.
Genomic interval8 318-9 619 nt1 302 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 318-10 342 ntGCF_000333195::NZ_CAPL01000086.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000333195::NZ_CAPL01000086.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAPL01000086.1All displayed genes belong to this local TCS context.
Neighborhood span8 318-10 342 nt2 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 318 nt10 342 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECK4_RS07820GCF_000333195#ECK4_RS07820
HKClassicCurrent focus
8 318-9 619 nt · Reverse (-)
ECK4_RS07815GCF_000333195#ECK4_RS07815
RROmpR
9 623-10 342 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009565#B21_RS08285Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2140067
Simplified PFAM architecture for HKOC_2140067
PFAM domain coverage: 209 / 433 aa (48.3%)
1 aa433 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-206] | HisKA[212-270] | HATPase_c[318-423]
- Domain count: 3
- Matched identifier: HKOC_2140067
- Positioned domains: HAMP 163-206 ; HisKA 212-270 ; HATPase_c 318-423
Cluster members and taxonomy
Representative gene: GCF_000009565#B21_RS08285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 268 238 · GCF_000333195
AssemblyASM33319v1 · Contighaploid
Genome composition4 678 866 bp · 50,5% GCEscherichia coli O5:K4(L):H4 str. ATCC 23502
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key