Gene detail

ECK5_RS16805

Histidine kinase, Unorthodox

Escherichia coli O10:K5(L):H4 str. ATCC 23506 · GCF_000333175

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeUnorthodoxLength1197 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000333175#ECK5_RS16805Stable P2CS identifier used across views.

GenomeGCF_000333175Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Selected clusterHKOC_0161002Run 6 · 4258 sequences · id 100% · cov 80%

External referencesWP_001326970.1 · A0ABD7FKB4 · MIST4 ECK5_RS16805RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

PBPbHisKAHATPase_cResponse_regHpt

Protein length1197 aaLength used to scale native and Biotite-like views.

Annotated domains66 with usable coordinates.

Domain coverage797 / 1197 aa (66.6%)Merged over positioned domains only.

Domain description2 PBPb,1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa1197 aa

Domain-by-domain annotation6 items

1 PBPb#1

73-276 aa · 204 aa · 17.0% of protein

Raw tokenPBPb:73:0.00000000000000432:276:209:219

2 PBPb#2

303-519 aa · 217 aa · 18.1% of protein

Raw tokenPBPb:303:8.06e-40:519:224:219

3 HisKA#3

711-777 aa · 67 aa · 5.6% of protein

Raw tokenHisKA:711:2.14e-16:777:67:64

4 HATPase_c#4

825-938 aa · 114 aa · 9.5% of protein

Raw tokenHATPase_c:825:1.15e-31:938:114:109

5 Response_reg#5

961-1070 aa · 110 aa · 9.2% of protein

Raw tokenResponse_reg:961:1.25e-39:1070:110:111

6 Hpt#6

1104-1188 aa · 85 aa · 7.1% of protein

Raw tokenHpt:1104:0.0000000918:1188:85:84

Raw architecture: PBPb:73:0.00000000000000432:276:209:219#PBPb:303:8.06e-40:519:224:219#HisKA:711:2.14e-16:777:67:64#HATPase_c:825:1.15e-31:938:114:109#Response_reg:961:1.25e-39:1070:110:111#Hpt:1104:0.0000000918:1188:85:84
Domain description: 2 PBPb,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000333175::NZ_CAPK01000078.1::G00025

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span140269-144481Genomic interval covered by the local TCS group.

Identifiers

Old locus tagECK5_13850RefSeq proteinWP_001326970.1

Context group IDGCF_000333175::NZ_CAPK01000078.1::G00025

Context members

ECK5_RS16805ECK5_RS16800

Partner locus tags

ECK5_RS16805ECK5_RS16800

Partner old locus tags

ECK5_13850ECK5_13860

Partner protein IDs

WP_001326970.1 WP_000991370.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_001326970.1Primary protein accession used for annex mappings.

UniProt accessionA0ABD7FKB4Primary UniProt accession resolved in the annex database.

UniProt IDA0ABD7FKB4_ECOLXDisplay identifier provided by UniProt.

GO / PubMed3 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0005886 GO:0005524 GO:0000155

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagECK5_RS16805Primary locus identifier stored in the genes table.

Old locus tagECK5_13850Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CAPK01000078.1Sequence record reported by the local genomic context database.

Genomic interval140 269-143 862 nt3 594 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span140 269-144 481 ntGCF_000333175::NZ_CAPK01000078.1::G00025

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000333175::NZ_CAPK01000078.1::G00025

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CAPK01000078.1All displayed genes belong to this local TCS context.

Neighborhood span140 269-144 481 nt4 213 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

140 269 nt144 481 nt

+-ECK5_RS16805 ECK5_RS16800

Neighborhood gene cards

2 genes in the current local neighborhood.

ECK5_RS16805GCF_000333175#ECK5_RS16805

HKUnorthodoxCurrent focus

140 269-143 862 nt · Reverse (-)

Old locus ECK5_13850RefSeq WP_001326970.1

Open current gene

ECK5_RS16800GCF_000333175#ECK5_RS16800

RRunclassified

143 867-144 481 nt · Reverse (-)

Old locus ECK5_13860RefSeq WP_000991370.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0161002HK

Run 64258 sequencesid 100%cov 80%

PFAM SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg + Hpt

Representative GCF_000005845#b2370

Selected clusterHKOC_0161002Run 6 · HK · 4258 sequences

Representative sequenceGCF_000005845#b2370Use this link to inspect the representative gene detail.

PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg + Hpt6 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_0161002

Simplified PFAM architecture for HKOC_0161002

PFAM domain coverage: 802 / 1197 aa (67.0%)

1 aa1197 aa

SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_regHpt

Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg + Hpt
Raw architecture: SBP_bac_3[63-276] | SBP_bac_3[306-520] | HisKA[711-777] | HATPase_c[825-937] | Response_reg[961-1070] | Hpt[1104-1186]
Domain count: 6
Matched identifier: HKOC_0161002
Positioned domains: SBP_bac_3 63-276 ; SBP_bac_3 306-520 ; HisKA 711-777 ; HATPase_c 825-937 ; Response_reg 961-1070 ; Hpt 1104-1186

Cluster members and taxonomy

Representative gene: GCF_000005845#b2370

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 246 623 · GCF_000333175

AssemblyASM33317v1 · Contighaploid

Genome composition5 095 957 bp · 50,5% GCEscherichia coli O10:K5(L):H4 str. ATCC 23506

Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key