1 HisKA#1
190-251 aa · 62 aa · 15.2% of protein
Raw token
HisKA:190:0.0000000000178:251:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS13385
Histidine kinase, Classic
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassHKTypeClassicLength407 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000332875#HMPREF0369_RS13385Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length407 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 407 aa (42.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa407 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
297-406 aa · 110 aa · 27.0% of protein
Raw token
HATPase_c:297:6.25e-24:406:110:109- Raw architecture: HisKA:190:0.0000000000178:251:63:64#HATPase_c:297:6.25e-24:406:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000332875::NZ_KB290698.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span68091-69314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_02818RefSeq proteinWP_009204710.1
Context group ID
GCF_000332875::NZ_KB290698.1::G00026Context members
HMPREF0369_RS13385
Partner locus tags
HMPREF0369_RS13385
Partner old locus tags
HMPREF0369_02818
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009204710.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS13385Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_02818Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290698.1Sequence record reported by the local genomic context database.
Genomic interval68 091-69 314 nt1 224 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 091-69 314 ntGCF_000332875::NZ_KB290698.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290698.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290698.1All displayed genes belong to this local TCS context.
Neighborhood span68 091-69 314 nt1 224 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 091 nt69 314 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0369_RS13385GCF_000332875#HMPREF0369_RS13385
HKClassicCurrent focus
68 091-69 314 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS13385The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2380141
Simplified PFAM architecture for HKOC_2380141
PFAM domain coverage: 169 / 407 aa (41.5%)
1 aa407 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[191-251] | HATPase_c[297-404]
- Domain count: 2
- Matched identifier: HKOC_2380141
- Positioned domains: HisKA 191-251 ; HATPase_c 297-404
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS13385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key