1 Response_reg#1
27-95 aa · 69 aa · 27.7% of protein
Raw token
Response_reg:27:0.00000000227:95:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS13150
Response regulator LytTR family
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassRRTypeLytTRLength249 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000332875#HMPREF0369_RS13150Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 249 aa (61.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 LytTR#2
148-231 aa · 84 aa · 33.7% of protein
Raw token
LytTR:148:0.0000000000000366:231:90:98- Raw architecture: Response_reg:27:0.00000000227:95:70:111#LytTR:148:0.0000000000000366:231:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000332875::NZ_KB290698.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span18619-19368Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_02767RefSeq proteinWP_009204662.1
Context group ID
GCF_000332875::NZ_KB290698.1::G00025Context members
HMPREF0369_RS13150
Partner locus tags
HMPREF0369_RS13150
Partner old locus tags
HMPREF0369_02767
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009204662.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS13150Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_02767Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290698.1Sequence record reported by the local genomic context database.
Genomic interval18 619-19 368 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 619-19 368 ntGCF_000332875::NZ_KB290698.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290698.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290698.1All displayed genes belong to this local TCS context.
Neighborhood span18 619-19 368 nt750 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 619 nt19 368 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0369_RS13150GCF_000332875#HMPREF0369_RS13150
RRLytTRCurrent focus
18 619-19 368 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS13150The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0732272
Simplified PFAM architecture for RROC_0732272
PFAM domain coverage: 196 / 249 aa (78.7%)
1 aa249 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[144-230]
- Domain count: 2
- Matched identifier: RROC_0732272
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 144-230 ; LytTR 144-230
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS13150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key