1 HAMP#1
155-226 aa · 72 aa · 15.8% of protein
Raw token
HAMP:155:0.000000000236:226:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS12630
Histidine kinase, Classic
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000332875#HMPREF0369_RS12630Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 457 aa (53.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-294 aa · 63 aa · 13.8% of protein
Raw token
HisKA:232:2.02e-16:294:63:643 HATPase_c#3
340-449 aa · 110 aa · 24.1% of protein
Raw token
HATPase_c:340:2.84e-28:449:110:109- Raw architecture: HAMP:155:0.000000000236:226:72:69#HisKA:232:2.02e-16:294:63:64#HATPase_c:340:2.84e-28:449:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000332875::NZ_KB290695.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10153-12194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_02657RefSeq proteinWP_009204587.1
Context group ID
GCF_000332875::NZ_KB290695.1::G00024Context members
HMPREF0369_RS12630HMPREF0369_RS12635
Partner locus tags
HMPREF0369_RS12630HMPREF0369_RS12635
Partner old locus tags
HMPREF0369_02657HMPREF0369_02658
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009204587.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS12630Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_02657Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290695.1Sequence record reported by the local genomic context database.
Genomic interval10 153-11 526 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 153-12 194 ntGCF_000332875::NZ_KB290695.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290695.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290695.1All displayed genes belong to this local TCS context.
Neighborhood span10 153-12 194 nt2 042 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 153 nt12 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0369_RS12630GCF_000332875#HMPREF0369_RS12630
HKClassicCurrent focus
10 153-11 526 nt · Reverse (-)
HMPREF0369_RS12635GCF_000332875#HMPREF0369_RS12635
RROmpR
11 523-12 194 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS12630The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1873847
Simplified PFAM architecture for HKOC_1873847
PFAM domain coverage: 213 / 457 aa (46.6%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-226] | HisKA[232-294] | HATPase_c[342-450]
- Domain count: 3
- Matched identifier: HKOC_1873847
- Positioned domains: HAMP 186-226 ; HisKA 232-294 ; HATPase_c 342-450
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS12630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key