1 Response_reg#1
4-117 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:4:4.91e-31:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS11500
Response regulator, unclassified
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassRRTypeunclassifiedLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000332875#HMPREF0369_RS11500Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 539 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-486 aa · 43 aa · 8.0% of protein
Raw token
HTH_AraC:444:0.000000000415:486:43:423 HTH_AraC#3
500-535 aa · 36 aa · 6.7% of protein
Raw token
HTH_AraC:500:0.00000023:535:36:42- Raw architecture: Response_reg:4:4.91e-31:117:114:111#HTH_AraC:444:0.000000000415:486:43:42#HTH_AraC:500:0.00000023:535:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000332875::NZ_KB290693.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116915-120000Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_02417RefSeq proteinWP_009204421.1
Context group ID
GCF_000332875::NZ_KB290693.1::G00023Context members
HMPREF0369_RS11500HMPREF0369_RS11505
Partner locus tags
HMPREF0369_RS11500HMPREF0369_RS11505
Partner old locus tags
HMPREF0369_02417HMPREF0369_02418
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009204421.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS11500Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_02417Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290693.1Sequence record reported by the local genomic context database.
Genomic interval116 915-118 534 nt1 620 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 915-120 000 ntGCF_000332875::NZ_KB290693.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290693.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290693.1All displayed genes belong to this local TCS context.
Neighborhood span116 915-120 000 nt3 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 915 nt120 000 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0369_RS11500GCF_000332875#HMPREF0369_RS11500
RRunclassifiedCurrent focus
116 915-118 534 nt · Forward (+)
HMPREF0369_RS11505GCF_000332875#HMPREF0369_RS11505
HKClassic
118 534-120 000 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS11500The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0091578
Simplified PFAM architecture for RROC_0091578
PFAM domain coverage: 319 / 539 aa (59.2%)
1 aa539 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[164-290] | HTH_18[459-537]
- Domain count: 3
- Matched identifier: RROC_0091578
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 164-290 ; GGDEF_2 164-290 ; HTH_18 459-537 ; HTH_18 459-537
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS11500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key