1 HisKA#1
151-214 aa · 64 aa · 17.0% of protein
Raw token
HisKA:151:0.0000000000116:214:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS10215
Histidine kinase, Classic
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000332875#HMPREF0369_RS10215Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 377 aa (46.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
263-374 aa · 112 aa · 29.7% of protein
Raw token
HATPase_c:263:1.18e-24:374:113:109- Raw architecture: HisKA:151:0.0000000000116:214:64:64#HATPase_c:263:1.18e-24:374:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000332875::NZ_KB290689.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13221-15045Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_02142RefSeq proteinWP_039862620.1
Context group ID
GCF_000332875::NZ_KB290689.1::G00021Context members
HMPREF0369_RS10210HMPREF0369_RS10215
Partner locus tags
HMPREF0369_RS10210HMPREF0369_RS10215
Partner old locus tags
HMPREF0369_02141HMPREF0369_02142
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039862620.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C5V9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C5V9_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS10215Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_02142Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290689.1Sequence record reported by the local genomic context database.
Genomic interval13 912-15 045 nt1 134 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 221-15 045 ntGCF_000332875::NZ_KB290689.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290689.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290689.1All displayed genes belong to this local TCS context.
Neighborhood span13 221-15 045 nt1 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 221 nt15 045 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0369_RS10210GCF_000332875#HMPREF0369_RS10210
RROmpR
13 221-13 922 nt · Forward (+)
HMPREF0369_RS10215GCF_000332875#HMPREF0369_RS10215
HKClassicCurrent focus
13 912-15 045 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS10480Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2634124
Simplified PFAM architecture for HKOC_2634124
PFAM domain coverage: 174 / 377 aa (46.2%)
1 aa377 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[152-214] | HATPase_c[263-373]
- Domain count: 2
- Matched identifier: HKOC_2634124
- Positioned domains: HisKA 152-214 ; HATPase_c 263-373
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS10480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key