1 HAMP#1
184-252 aa · 69 aa · 13.9% of protein
Raw token
HAMP:184:6.06e-16:252:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS09060
Histidine kinase, Classic
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000332875#HMPREF0369_RS09060Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 495 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
263-330 aa · 68 aa · 13.7% of protein
Raw token
HisKA:263:6.88e-16:330:68:643 HATPase_c#3
377-485 aa · 109 aa · 22.0% of protein
Raw token
HATPase_c:377:5.08e-32:485:109:109- Raw architecture: HAMP:184:6.06e-16:252:69:69#HisKA:263:6.88e-16:330:68:64#HATPase_c:377:5.08e-32:485:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000332875::NZ_KB290681.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4456-6634Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_01907RefSeq proteinWP_009204076.1
Context group ID
GCF_000332875::NZ_KB290681.1::G00016Context members
HMPREF0369_RS09060HMPREF0369_RS09065
Partner locus tags
HMPREF0369_RS09060HMPREF0369_RS09065
Partner old locus tags
HMPREF0369_01907HMPREF0369_01908
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009204076.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS09060Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_01907Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290681.1Sequence record reported by the local genomic context database.
Genomic interval4 456-5 943 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 456-6 634 ntGCF_000332875::NZ_KB290681.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290681.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290681.1All displayed genes belong to this local TCS context.
Neighborhood span4 456-6 634 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 456 nt6 634 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0369_RS09060GCF_000332875#HMPREF0369_RS09060
HKClassicCurrent focus
4 456-5 943 nt · Forward (+)
HMPREF0369_RS09065GCF_000332875#HMPREF0369_RS09065
RROmpR
5 945-6 634 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS09060The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504431
Simplified PFAM architecture for HKOC_1504431
PFAM domain coverage: 228 / 495 aa (46.1%)
1 aa495 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-251] | HisKA[264-329] | HATPase_c[378-486]
- Domain count: 3
- Matched identifier: HKOC_1504431
- Positioned domains: HAMP 199-251 ; HisKA 264-329 ; HATPase_c 378-486
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS09060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key