1 HisKA_3#1
243-310 aa · 68 aa · 15.5% of protein
Raw token
HisKA_3:243:2.43e-21:310:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS06060
Histidine kinase, Classic
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000332875#HMPREF0369_RS06060Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 440 aa (35.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
350-435 aa · 86 aa · 19.5% of protein
Raw token
HATPase_c:350:0.000000000000205:435:106:109- Raw architecture: HisKA_3:243:2.43e-21:310:68:68#HATPase_c:350:0.000000000000205:435:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000332875::NZ_KB290658.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53141-55128Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_01259RefSeq proteinWP_008390541.1
Context group ID
GCF_000332875::NZ_KB290658.1::G00010Context members
HMPREF0369_RS06060HMPREF0369_RS06065
Partner locus tags
HMPREF0369_RS06060HMPREF0369_RS06065
Partner old locus tags
HMPREF0369_01259HMPREF0369_01260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008390541.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1IUE4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1IUE4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS06060Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_01259Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290658.1Sequence record reported by the local genomic context database.
Genomic interval53 141-54 463 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 141-55 128 ntGCF_000332875::NZ_KB290658.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290658.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290658.1All displayed genes belong to this local TCS context.
Neighborhood span53 141-55 128 nt1 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 141 nt55 128 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0369_RS06060GCF_000332875#HMPREF0369_RS06060
HKClassicCurrent focus
53 141-54 463 nt · Forward (+)
HMPREF0369_RS06065GCF_000332875#HMPREF0369_RS06065
RRNarL
54 460-55 128 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS06060The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2071852
Simplified PFAM architecture for HKOC_2071852
PFAM domain coverage: 153 / 440 aa (34.8%)
1 aa440 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[243-310] | HATPase_c[350-434]
- Domain count: 2
- Matched identifier: HKOC_2071852
- Positioned domains: HisKA_3 243-310 ; HATPase_c 350-434
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS06060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key