1 HisKA#1
208-273 aa · 66 aa · 8.2% of protein
Raw token
HisKA:208:2.46e-19:273:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS05830
Histidine kinase, Unorthodox
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassHKTypeUnorthodoxLength804 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000332875#HMPREF0369_RS05830Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length804 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage374 / 804 aa (46.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa804 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
320-433 aa · 114 aa · 14.2% of protein
Raw token
HATPase_c:320:1.5e-34:433:114:1093 Response_reg#3
462-572 aa · 111 aa · 13.8% of protein
Raw token
Response_reg:462:9.13e-24:572:111:1114 Hpt#4
628-710 aa · 83 aa · 10.3% of protein
Raw token
Hpt:628:0.0000000135:710:83:84- Raw architecture: HisKA:208:2.46e-19:273:66:64#HATPase_c:320:1.5e-34:433:114:109#Response_reg:462:9.13e-24:572:111:111#Hpt:628:0.0000000135:710:83:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000332875::NZ_KB290656.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18158-21180Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_01213RefSeq proteinWP_009203570.1
Context group ID
GCF_000332875::NZ_KB290656.1::G00009Context members
HMPREF0369_RS05830HMPREF0369_RS05835
Partner locus tags
HMPREF0369_RS05830HMPREF0369_RS05835
Partner old locus tags
HMPREF0369_01213HMPREF0369_01214
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009203570.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS05830Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_01213Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290656.1Sequence record reported by the local genomic context database.
Genomic interval18 158-20 572 nt2 415 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 158-21 180 ntGCF_000332875::NZ_KB290656.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290656.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290656.1All displayed genes belong to this local TCS context.
Neighborhood span18 158-21 180 nt3 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 158 nt21 180 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0369_RS05830GCF_000332875#HMPREF0369_RS05830
HKUnorthodoxCurrent focus
18 158-20 572 nt · Forward (+)
HMPREF0369_RS05835GCF_000332875#HMPREF0369_RS05835
RRNarL
20 569-21 180 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS05830The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Hpt4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0549802
Simplified PFAM architecture for HKOC_0549802
PFAM domain coverage: 354 / 804 aa (44.0%)
1 aa804 aa
HisKAHATPase_cResponse_regHpt
- Simplified architecture: HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: HisKA[208-273] | HATPase_c[320-432] | Response_reg[462-570] | Hpt[629-694]
- Domain count: 4
- Matched identifier: HKOC_0549802
- Positioned domains: HisKA 208-273 ; HATPase_c 320-432 ; Response_reg 462-570 ; Hpt 629-694
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS05830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key