1 HisKA#1
235-296 aa · 62 aa · 13.7% of protein
Raw token
HisKA:235:0.0000000000000416:296:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS05645
Histidine kinase, Classic
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000332875#HMPREF0369_RS05645Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 454 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
345-453 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:345:6.52e-21:453:109:109- Raw architecture: HisKA:235:0.0000000000000416:296:62:64#HATPase_c:345:6.52e-21:453:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000332875::NZ_KB290655.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50551-52568Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_01174RefSeq proteinWP_009203535.1
Context group ID
GCF_000332875::NZ_KB290655.1::G00008Context members
HMPREF0369_RS05640HMPREF0369_RS05645
Partner locus tags
HMPREF0369_RS05640HMPREF0369_RS05645
Partner old locus tags
HMPREF0369_01173HMPREF0369_01174
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009203535.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS05645Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_01174Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290655.1Sequence record reported by the local genomic context database.
Genomic interval51 204-52 568 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 551-52 568 ntGCF_000332875::NZ_KB290655.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290655.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290655.1All displayed genes belong to this local TCS context.
Neighborhood span50 551-52 568 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 551 nt52 568 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0369_RS05640GCF_000332875#HMPREF0369_RS05640
RROmpR
50 551-51 213 nt · Forward (+)
HMPREF0369_RS05645GCF_000332875#HMPREF0369_RS05645
HKClassicCurrent focus
51 204-52 568 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS05645The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1912438
Simplified PFAM architecture for HKOC_1912438
PFAM domain coverage: 171 / 454 aa (37.7%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-296] | HATPase_c[345-453]
- Domain count: 2
- Matched identifier: HKOC_1912438
- Positioned domains: HisKA 235-296 ; HATPase_c 345-453
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS05645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key