1 Response_reg#1
149-266 aa · 118 aa · 42.8% of protein
Raw token
Response_reg:149:4.13e-31:266:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS03200
Response regulator, unclassified
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassRRTypeunclassifiedLength276 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000332875#HMPREF0369_RS03200Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage118 / 276 aa (42.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:149:4.13e-31:266:118:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000332875::NZ_KB290648.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19921-20751Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_00660RefSeq proteinWP_009203172.1
Context group ID
GCF_000332875::NZ_KB290648.1::G00004Context members
HMPREF0369_RS03200
Partner locus tags
HMPREF0369_RS03200
Partner old locus tags
HMPREF0369_00660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009203172.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS03200Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_00660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290648.1Sequence record reported by the local genomic context database.
Genomic interval19 921-20 751 nt831 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 921-20 751 ntGCF_000332875::NZ_KB290648.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290648.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290648.1All displayed genes belong to this local TCS context.
Neighborhood span19 921-20 751 nt831 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 921 nt20 751 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0369_RS03200GCF_000332875#HMPREF0369_RS03200
RRunclassifiedCurrent focus
19 921-20 751 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS03200The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0602989
Simplified PFAM architecture for RROC_0602989
PFAM domain coverage: 233 / 276 aa (84.4%)
1 aa276 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[9-124] | Response_reg[149-265]
- Domain count: 2
- Matched identifier: RROC_0602989
- Positioned domains: HATPase_c 9-124 ; HATPase_c 9-124 ; Response_reg 149-265 ; Response_reg 149-265
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS03200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key