1 Response_reg#1
4-112 aa · 109 aa · 49.8% of protein
Raw token
Response_reg:4:2.63e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS00675
Response regulator OmpR family
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000332875#HMPREF0369_RS00675Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 219 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.3% of protein
Raw token
Trans_reg_C:143:5.59e-24:215:77:77- Raw architecture: Response_reg:4:2.63e-33:112:111:111#Trans_reg_C:143:5.59e-24:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000332875::NZ_KB290631.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9525-11608Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_00139RefSeq proteinWP_008392941.1
Context group ID
GCF_000332875::NZ_KB290631.1::G00001Context members
HMPREF0369_RS00670HMPREF0369_RS00675
Partner locus tags
HMPREF0369_RS00670HMPREF0369_RS00675
Partner old locus tags
HMPREF0369_00138HMPREF0369_00139
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008392941.1Primary protein accession used for annex mappings.
UniProt accessionD4MX27Primary UniProt accession resolved in the annex database.
UniProt IDD4MX27_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS00675Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_00139Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290631.1Sequence record reported by the local genomic context database.
Genomic interval10 949-11 608 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 525-11 608 ntGCF_000332875::NZ_KB290631.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290631.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290631.1All displayed genes belong to this local TCS context.
Neighborhood span9 525-11 608 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 525 nt11 608 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0369_RS00670GCF_000332875#HMPREF0369_RS00670
HKClassic
9 525-10 952 nt · Reverse (-)
HMPREF0369_RS00675GCF_000332875#HMPREF0369_RS00675
RROmpRCurrent focus
10 949-11 608 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS00190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1767887
Simplified PFAM architecture for RROC_1767887
PFAM domain coverage: 182 / 219 aa (83.1%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[143-215]
- Domain count: 2
- Matched identifier: RROC_1767887
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 143-215 ; Trans_reg_C 143-215
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS00190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key