1 HAMP#1
173-239 aa · 67 aa · 14.1% of protein
Raw token
HAMP:173:1.25e-16:239:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0369_RS00670
Histidine kinase, Classic
Anaerostipes hadrus ATCC 29173 = JCM 17467 · GCF_000332875
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000332875#HMPREF0369_RS00670Stable P2CS identifier used across views.
GenomeGCF_000332875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage227 / 475 aa (47.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-303 aa · 53 aa · 11.2% of protein
Raw token
HisKA:251:0.000000000193:303:53:643 HATPase_c#3
360-466 aa · 107 aa · 22.5% of protein
Raw token
HATPase_c:360:2.19e-30:466:107:109- Raw architecture: HAMP:173:1.25e-16:239:67:69#HisKA:251:0.000000000193:303:53:64#HATPase_c:360:2.19e-30:466:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000332875::NZ_KB290631.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9525-11608Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0369_00138RefSeq proteinWP_009202812.1
Context group ID
GCF_000332875::NZ_KB290631.1::G00001Context members
HMPREF0369_RS00670HMPREF0369_RS00675
Partner locus tags
HMPREF0369_RS00670HMPREF0369_RS00675
Partner old locus tags
HMPREF0369_00138HMPREF0369_00139
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009202812.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0369_RS00670Primary locus identifier stored in the genes table.
Old locus tagHMPREF0369_00138Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB290631.1Sequence record reported by the local genomic context database.
Genomic interval9 525-10 952 nt1 428 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 525-11 608 ntGCF_000332875::NZ_KB290631.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000332875::NZ_KB290631.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB290631.1All displayed genes belong to this local TCS context.
Neighborhood span9 525-11 608 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 525 nt11 608 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0369_RS00670GCF_000332875#HMPREF0369_RS00670
HKClassicCurrent focus
9 525-10 952 nt · Reverse (-)
HMPREF0369_RS00675GCF_000332875#HMPREF0369_RS00675
RROmpR
10 949-11 608 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS00670The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1664672
Simplified PFAM architecture for HKOC_1664672
PFAM domain coverage: 212 / 475 aa (44.6%)
1 aa475 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[187-238] | HisKA[251-303] | HATPase_c[360-466]
- Domain count: 3
- Matched identifier: HKOC_1664672
- Positioned domains: HAMP 187-238 ; HisKA 251-303 ; HATPase_c 360-466
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS00670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 757 · GCF_000332875
AssemblyASM33287v2 · Scaffoldhaploid
Genome composition2 772 228 bp · 37,0% GCAnaerostipes hadrus ATCC 29173 = JCM 17467
Signal transduction countsGenes 48 · HK 23 · RR 23CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key