1 Response_reg#1
5-116 aa · 112 aa · 43.4% of protein
Raw token
Response_reg:5:0.00000056:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OIK_RS07585
Response regulator LytTR family
Enterococcus faecium EnGen0027 · GCF_000321925
ClassRRTypeLytTRLength258 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000321925#OIK_RS07585Stable P2CS identifier used across views.
GenomeGCF_000321925Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length258 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 258 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa258 aa
Domain-by-domain annotation2 items
2 LytTR#2
156-250 aa · 95 aa · 36.8% of protein
Raw token
LytTR:156:0.000000393:250:98:98- Raw architecture: Response_reg:5:0.00000056:116:112:111#LytTR:156:0.000000393:250:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000321925::NZ_KB029715.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span459141-459917Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOIK_02860RefSeq proteinWP_002333150.1
Context group ID
GCF_000321925::NZ_KB029715.1::G00004Context members
OIK_RS07585
Partner locus tags
OIK_RS07585
Partner old locus tags
OIK_02860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002333150.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4QJP1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4QJP1_9ENTEDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOIK_RS07585Primary locus identifier stored in the genes table.
Old locus tagOIK_02860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB029715.1Sequence record reported by the local genomic context database.
Genomic interval459 141-459 917 nt777 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span459 141-459 917 ntGCF_000321925::NZ_KB029715.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000321925::NZ_KB029715.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB029715.1All displayed genes belong to this local TCS context.
Neighborhood span459 141-459 917 nt777 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
459 141 nt459 917 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OIK_RS07585GCF_000321925#OIK_RS07585
RRLytTRCurrent focus
459 141-459 917 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000321765#OI5_RS09455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0662390
Simplified PFAM architecture for RROC_0662390
PFAM domain coverage: 211 / 258 aa (81.8%)
1 aa258 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-121] | LytTR[156-249]
- Domain count: 2
- Matched identifier: RROC_0662390
- Positioned domains: Response_reg 5-121 ; Response_reg 5-121 ; LytTR 156-249 ; LytTR 156-249
Cluster members and taxonomy
Representative gene: GCF_000321765#OI5_RS09455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 904 · GCF_000321925
AssemblyEnte_faec_E1620_V1 · Scaffoldhaploid
Genome composition2 576 211 bp · 38,0% GCEnterococcus faecium EnGen0027
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key