1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:3.01e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OGQ_RS14125
Response regulator OmpR family
Enterococcus faecium EnGen0017 · GCF_000321645
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000321645#OGQ_RS14125Stable P2CS identifier used across views.
GenomeGCF_000321645Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:152:5.56e-35:228:77:77- Raw architecture: Response_reg:4:3.01e-38:113:111:111#Trans_reg_C:152:5.56e-35:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000321645::NZ_KB029504.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span155174-157718Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOGQ_02177RefSeq proteinWP_002288850.1
Context group ID
GCF_000321645::NZ_KB029504.1::G00014Context members
OGQ_RS14120OGQ_RS14125
Partner locus tags
OGQ_RS14120OGQ_RS14125
Partner old locus tags
OGQ_02176OGQ_02177
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002288850.1Primary protein accession used for annex mappings.
UniProt accessionA0A829F7H7Primary UniProt accession resolved in the annex database.
UniProt IDA0A829F7H7_ENTFCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOGQ_RS14125Primary locus identifier stored in the genes table.
Old locus tagOGQ_02177Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB029504.1Sequence record reported by the local genomic context database.
Genomic interval157 014-157 718 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span155 174-157 718 ntGCF_000321645::NZ_KB029504.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000321645::NZ_KB029504.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB029504.1All displayed genes belong to this local TCS context.
Neighborhood span155 174-157 718 nt2 545 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
155 174 nt157 718 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OGQ_RS14120GCF_000321645#OGQ_RS14120
HKClassic
155 174-157 009 nt · Reverse (-)
OGQ_RS14125GCF_000321645#OGQ_RS14125
RROmpRCurrent focus
157 014-157 718 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS11940Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047357
Simplified PFAM architecture for RROC_1047357
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1047357
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS11940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 889 · GCF_000321645
AssemblyEnte_faec_E1050_V1 · Scaffoldhaploid
Genome composition2 814 620 bp · 38,0% GCEnterococcus faecium EnGen0017
Signal transduction countsGenes 34 · HK 17 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key