1 HAMP#1
198-268 aa · 71 aa · 14.2% of protein
Raw token
HAMP:198:0.0000000000018:268:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OGQ_RS11805
Histidine kinase, Classic
Enterococcus faecium EnGen0017 · GCF_000321645
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000321645#OGQ_RS11805Stable P2CS identifier used across views.
GenomeGCF_000321645Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 501 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
273-339 aa · 67 aa · 13.4% of protein
Raw token
HisKA:273:0.00000000000000312:339:67:643 HATPase_c#3
387-497 aa · 111 aa · 22.2% of protein
Raw token
HATPase_c:387:9.42e-28:497:111:109- Raw architecture: HAMP:198:0.0000000000018:268:71:69#HisKA:273:0.00000000000000312:339:67:64#HATPase_c:387:9.42e-28:497:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000321645::NZ_KB029503.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5716-7904Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOGQ_01700RefSeq proteinWP_002295348.1
Context group ID
GCF_000321645::NZ_KB029503.1::G00012Context members
OGQ_RS11805OGQ_RS11810
Partner locus tags
OGQ_RS11805OGQ_RS11810
Partner old locus tags
OGQ_01700OGQ_01701
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002295348.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8NHT0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8NHT0_ENTFCDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOGQ_RS11805Primary locus identifier stored in the genes table.
Old locus tagOGQ_01700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB029503.1Sequence record reported by the local genomic context database.
Genomic interval5 716-7 221 nt1 506 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 716-7 904 ntGCF_000321645::NZ_KB029503.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000321645::NZ_KB029503.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB029503.1All displayed genes belong to this local TCS context.
Neighborhood span5 716-7 904 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 716 nt7 904 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OGQ_RS11805GCF_000321645#OGQ_RS11805
HKClassicCurrent focus
5 716-7 221 nt · Reverse (-)
OGQ_RS11810GCF_000321645#OGQ_RS11810
RROmpR
7 218-7 904 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172655#EFME1071_RS13045Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468249
Simplified PFAM architecture for HKOC_1468249
PFAM domain coverage: 377 / 501 aa (75.2%)
1 aa501 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[46-193] | HAMP[215-268] | HisKA[274-339] | HATPase_c[388-496]
- Domain count: 4
- Matched identifier: HKOC_1468249
- Positioned domains: ArlS_N 46-193 ; HAMP 215-268 ; HisKA 274-339 ; HATPase_c 388-496
Cluster members and taxonomy
Representative gene: GCF_000172655#EFME1071_RS13045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 889 · GCF_000321645
AssemblyEnte_faec_E1050_V1 · Scaffoldhaploid
Genome composition2 814 620 bp · 38,0% GCEnterococcus faecium EnGen0017
Signal transduction countsGenes 34 · HK 17 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key