1 HAMP#1
287-357 aa · 71 aa · 12.4% of protein
Raw token
HAMP:287:0.000000699:357:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OG9_RS18385
Histidine kinase, Classic
Enterococcus faecium EnGen0005 · GCF_000321465
ClassHKTypeClassicLength574 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000321465#OG9_RS18385Stable P2CS identifier used across views.
GenomeGCF_000321465Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 574 aa (41.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-450 aa · 79 aa · 13.8% of protein
Raw token
His_kinase:372:2.57e-28:450:80:803 HATPase_c#3
488-573 aa · 86 aa · 15.0% of protein
Raw token
HATPase_c:488:0.00000000233:573:97:109- Raw architecture: HAMP:287:0.000000699:357:71:69#His_kinase:372:2.57e-28:450:80:80#HATPase_c:488:0.00000000233:573:97:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000321465::NZ_KB029388.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48625-51797Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOG9_05153RefSeq proteinWP_002324608.1
Context group ID
GCF_000321465::NZ_KB029388.1::G00017Context members
OG9_RS18385OG9_RS18390
Partner locus tags
OG9_RS18385OG9_RS18390
Partner old locus tags
OG9_05153OG9_05154
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002324608.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOG9_RS18385Primary locus identifier stored in the genes table.
Old locus tagOG9_05153Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB029388.1Sequence record reported by the local genomic context database.
Genomic interval48 625-50 349 nt1 725 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 625-51 797 ntGCF_000321465::NZ_KB029388.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000321465::NZ_KB029388.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB029388.1All displayed genes belong to this local TCS context.
Neighborhood span48 625-51 797 nt3 173 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 625 nt51 797 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OG9_RS18385GCF_000321465#OG9_RS18385
HKClassicCurrent focus
48 625-50 349 nt · Forward (+)
OG9_RS18390GCF_000321465#OG9_RS18390
RRunclassified
50 346-51 797 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000321465#OG9_RS18385The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1192973
Simplified PFAM architecture for HKOC_1192973
PFAM domain coverage: 215 / 574 aa (37.5%)
1 aa574 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[316-357] | His_kinase[372-449] | HATPase_c[478-572]
- Domain count: 3
- Matched identifier: HKOC_1192973
- Positioned domains: HAMP 316-357 ; His_kinase 372-449 ; HATPase_c 478-572
Cluster members and taxonomy
Representative gene: GCF_000321465#OG9_RS18385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 138 880 · GCF_000321465
AssemblyEnte_faec_E0045_V1 · Scaffoldhaploid
Genome composition2 719 774 bp · 38,0% GCEnterococcus faecium EnGen0005
Signal transduction countsGenes 31 · HK 15 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key