1 Response_reg#1
4-114 aa · 111 aa · 57.2% of protein
Raw token
Response_reg:4:6.04e-27:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BC17_RS11760
Response regulator NarL family
Escherichia coli 8.0569 · GCF_000305355
ClassRRTypeNarLLength194 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000305355#BC17_RS11760Stable P2CS identifier used across views.
GenomeGCF_000305355Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length194 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 194 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa194 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
136-190 aa · 55 aa · 28.4% of protein
Raw token
HTH_LUXR:136:7.82e-20:190:55:58- Raw architecture: Response_reg:4:6.04e-27:114:111:111#HTH_LUXR:136:7.82e-20:190:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000305355::NZ_JH969564.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5586-7878Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEC80569_2152RefSeq proteinWP_000974596.1
Context group ID
GCF_000305355::NZ_JH969564.1::G00018Context members
BC17_RS11765BC17_RS11760
Partner locus tags
BC17_RS11765BC17_RS11760
Partner old locus tags
EC80569_2151EC80569_2152
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000974596.1Primary protein accession used for annex mappings.
UniProt accessionA0A0F6U081Primary UniProt accession resolved in the annex database.
UniProt IDA0A0F6U081_CITAMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBC17_RS11760Primary locus identifier stored in the genes table.
Old locus tagEC80569_2152Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH969564.1Sequence record reported by the local genomic context database.
Genomic interval7 294-7 878 nt585 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 586-7 878 ntGCF_000305355::NZ_JH969564.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000305355::NZ_JH969564.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH969564.1All displayed genes belong to this local TCS context.
Neighborhood span5 586-7 878 nt2 293 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 586 nt7 878 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BC17_RS11765GCF_000305355#BC17_RS11765
HKClassic
5 586-7 319 nt · Forward (+)
BC17_RS11760GCF_000305355#BC17_RS11760
RRNarLCurrent focus
7 294-7 878 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000194555#EC24168_RS21605Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2160816
Simplified PFAM architecture for RROC_2160816
PFAM domain coverage: 165 / 194 aa (85.1%)
1 aa194 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-113] | GerE[134-188]
- Domain count: 2
- Matched identifier: RROC_2160816
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; GerE 134-188 ; GerE 134-188
Cluster members and taxonomy
Representative gene: GCF_000194555#EC24168_RS21605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 005 464 · GCF_000305355
AssemblyASM30535v1 · Scaffoldhaploid
Genome composition4 729 351 bp · 51,0% GCEscherichia coli 8.0569
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key