1 HisKA#1
342-403 aa · 62 aa · 10.7% of protein
Raw token
HisKA:342:0.00000696:403:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BE82_RS11430
Histidine kinase, Classic
Escherichia coli 8.0566 · GCF_000305175
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000305175#BE82_RS11430Stable P2CS identifier used across views.
GenomeGCF_000305175Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 577 aa (28.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
459-562 aa · 104 aa · 18.0% of protein
Raw token
HATPase_c:459:2.58e-22:562:108:109- Raw architecture: HisKA:342:0.00000696:403:62:64#HATPase_c:459:2.58e-22:562:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000305175::NZ_JH970569.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5578-7870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEC80566_2191RefSeq proteinWP_000948388.1
Context group ID
GCF_000305175::NZ_JH970569.1::G00018Context members
BE82_RS11430BE82_RS11425
Partner locus tags
BE82_RS11430BE82_RS11425
Partner old locus tags
EC80566_2191EC80566_2192
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000948388.1Primary protein accession used for annex mappings.
UniProt accessionA0A7L5XB83Primary UniProt accession resolved in the annex database.
UniProt IDA0A7L5XB83_9ESCHDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBE82_RS11430Primary locus identifier stored in the genes table.
Old locus tagEC80566_2191Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH970569.1Sequence record reported by the local genomic context database.
Genomic interval5 578-7 311 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 578-7 870 ntGCF_000305175::NZ_JH970569.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000305175::NZ_JH970569.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH970569.1All displayed genes belong to this local TCS context.
Neighborhood span5 578-7 870 nt2 293 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 578 nt7 870 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BE82_RS11430GCF_000305175#BE82_RS11430
HKClassicCurrent focus
5 578-7 311 nt · Forward (+)
BE82_RS11425GCF_000305175#BE82_RS11425
RRNarL
7 286-7 870 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000194555#EC24168_RS21600Use this link to inspect the representative gene detail.
PFAM architecturePhosphonate-bd + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1177339
Simplified PFAM architecture for HKOC_1177339
PFAM domain coverage: 337 / 577 aa (58.4%)
1 aa577 aa
Phosphonate-bdHATPase_c
- Simplified architecture: Phosphonate-bd + HATPase_c
- Raw architecture: Phosphonate-bd[13-246] | HATPase_c[461-563]
- Domain count: 2
- Matched identifier: HKOC_1177339
- Positioned domains: Phosphonate-bd 13-246 ; HATPase_c 461-563
Cluster members and taxonomy
Representative gene: GCF_000194555#EC24168_RS21600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 005 462 · GCF_000305175
AssemblyASM30517v1 · Scaffoldhaploid
Genome composition4 725 170 bp · 51,0% GCEscherichia coli 8.0566
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key