1 Response_reg#1
7-114 aa · 108 aa · 47.8% of protein
Raw token
Response_reg:7:7.24e-30:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1351_RS12680
Response regulator OmpR family
Enterococcus faecium 510 · GCF_000295535
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000295535#HMPREF1351_RS12680Stable P2CS identifier used across views.
GenomeGCF_000295535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 226 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 33.2% of protein
Raw token
Trans_reg_C:151:3.69e-28:225:77:77- Raw architecture: Response_reg:7:7.24e-30:114:110:111#Trans_reg_C:151:3.69e-28:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000295535::NZ_JH814631.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103579-105148Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1351_02749RefSeq proteinWP_002287499.1
Context group ID
GCF_000295535::NZ_JH814631.1::G00016Context members
HMPREF1351_RS12675HMPREF1351_RS12680
Partner locus tags
HMPREF1351_RS12675HMPREF1351_RS12680
Partner old locus tags
HMPREF1351_02748HMPREF1351_02749
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002287499.1Primary protein accession used for annex mappings.
UniProt accessionQ3Y126Primary UniProt accession resolved in the annex database.
UniProt IDQ3Y126_ENTFDDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1351_RS12680Primary locus identifier stored in the genes table.
Old locus tagHMPREF1351_02749Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH814631.1Sequence record reported by the local genomic context database.
Genomic interval104 468-105 148 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 579-105 148 ntGCF_000295535::NZ_JH814631.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295535::NZ_JH814631.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH814631.1All displayed genes belong to this local TCS context.
Neighborhood span103 579-105 148 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 579 nt105 148 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1351_RS12675GCF_000295535#HMPREF1351_RS12675
HKClassic
103 579-104 475 nt · Reverse (-)
HMPREF1351_RS12680GCF_000295535#HMPREF1351_RS12680
RROmpRCurrent focus
104 468-105 148 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS12375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408424
Simplified PFAM architecture for RROC_1408424
PFAM domain coverage: 181 / 226 aa (80.1%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-114] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1408424
- Positioned domains: Response_reg 7-114 ; Response_reg 7-114 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS12375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 809 · GCF_000295535
AssemblyASM29553v2 · Scaffoldhaploid
Genome composition2 893 419 bp · 37,5% GCEnterococcus faecium 510
Signal transduction countsGenes 38 · HK 18 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key