1 Response_reg#1
5-116 aa · 112 aa · 43.4% of protein
Raw token
Response_reg:5:0.000000737:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1366_RS07790
Response regulator LytTR family
Enterococcus faecium ERV26 · GCF_000295115
ClassRRTypeLytTRLength258 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000295115#HMPREF1366_RS07790Stable P2CS identifier used across views.
GenomeGCF_000295115Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length258 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 258 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa258 aa
Domain-by-domain annotation2 items
2 LytTR#2
156-250 aa · 95 aa · 36.8% of protein
Raw token
LytTR:156:0.0000000704:250:98:98- Raw architecture: Response_reg:5:0.000000737:116:112:111#LytTR:156:0.0000000704:250:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000295115::NZ_JH809934.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span16378-17154Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1366_01693RefSeq proteinWP_002287742.1
Context group ID
GCF_000295115::NZ_JH809934.1::G00010Context members
HMPREF1366_RS07790
Partner locus tags
HMPREF1366_RS07790
Partner old locus tags
HMPREF1366_01693
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002287742.1Primary protein accession used for annex mappings.
UniProt accessionA0A829F1Y6Primary UniProt accession resolved in the annex database.
UniProt IDA0A829F1Y6_ENTFCDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1366_RS07790Primary locus identifier stored in the genes table.
Old locus tagHMPREF1366_01693Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH809934.1Sequence record reported by the local genomic context database.
Genomic interval16 378-17 154 nt777 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 378-17 154 ntGCF_000295115::NZ_JH809934.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295115::NZ_JH809934.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH809934.1All displayed genes belong to this local TCS context.
Neighborhood span16 378-17 154 nt777 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 378 nt17 154 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1366_RS07790GCF_000295115#HMPREF1366_RS07790
RRLytTRCurrent focus
16 378-17 154 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902164025#FN517_RS28130Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0622556
Simplified PFAM architecture for RROC_0622556
PFAM domain coverage: 213 / 268 aa (79.5%)
1 aa268 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[15-133] | LytTR[166-259]
- Domain count: 2
- Matched identifier: RROC_0622556
- Positioned domains: Response_reg 15-133 ; LytTR 166-259
Cluster members and taxonomy
Representative gene: GCF_902164025#FN517_RS28130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 824 · GCF_000295115
AssemblyASM29511v2 · Scaffoldhaploid
Genome composition3 040 911 bp · 38,0% GCEnterococcus faecium ERV26
Signal transduction countsGenes 37 · HK 17 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key