1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:2.54e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1372_RS03520
Response regulator NarL family
Enterococcus faecium P1139 · GCF_000295035
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000295035#HMPREF1372_RS03520Stable P2CS identifier used across views.
GenomeGCF_000295035Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:3.45e-24:203:58:58- Raw architecture: Response_reg:4:2.54e-27:116:113:111#HTH_LUXR:146:3.45e-24:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000295035::NZ_JH809205.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4056-5762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1372_00758RefSeq proteinWP_002295404.1
Context group ID
GCF_000295035::NZ_JH809205.1::G00006Context members
HMPREF1372_RS03515HMPREF1372_RS03520
Partner locus tags
HMPREF1372_RS03515HMPREF1372_RS03520
Partner old locus tags
HMPREF1372_00757HMPREF1372_00758
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002295404.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3L646Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3L646_ENTFCDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1372_RS03520Primary locus identifier stored in the genes table.
Old locus tagHMPREF1372_00758Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH809205.1Sequence record reported by the local genomic context database.
Genomic interval5 130-5 762 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 056-5 762 ntGCF_000295035::NZ_JH809205.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295035::NZ_JH809205.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH809205.1All displayed genes belong to this local TCS context.
Neighborhood span4 056-5 762 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 056 nt5 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1372_RS03515GCF_000295035#HMPREF1372_RS03515
HKClassic
4 056-5 123 nt · Forward (+)
HMPREF1372_RS03520GCF_000295035#HMPREF1372_RS03520
RRNarLCurrent focus
5 130-5 762 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000415265#D357_RS11385Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1963564
Simplified PFAM architecture for RROC_1963564
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_1963564
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_000415265#D357_RS11385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 830 · GCF_000295035
AssemblyASM29503v2 · Scaffoldhaploid
Genome composition2 986 074 bp · 37,5% GCEnterococcus faecium P1139
Signal transduction countsGenes 38 · HK 18 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key