1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:4.1e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1344_RS03415
Response regulator OmpR family
Enterococcus faecalis R508 · GCF_000294325
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294325#HMPREF1344_RS03415Stable P2CS identifier used across views.
GenomeGCF_000294325Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 228 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-226 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:152:1.37e-28:226:76:77- Raw architecture: Response_reg:4:4.1e-32:113:111:111#Trans_reg_C:152:1.37e-28:226:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294325::NZ_JH804746.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39618-41844Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1344_00034RefSeq proteinWP_002355954.1
Context group ID
GCF_000294325::NZ_JH804746.1::G00001Context members
HMPREF1344_RS03415HMPREF1344_RS03420
Partner locus tags
HMPREF1344_RS03415HMPREF1344_RS03420
Partner old locus tags
HMPREF1344_00034HMPREF1344_00035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002355954.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TNP5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TNP5_ENTFLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1344_RS03415Primary locus identifier stored in the genes table.
Old locus tagHMPREF1344_00034Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804746.1Sequence record reported by the local genomic context database.
Genomic interval39 618-40 304 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 618-41 844 ntGCF_000294325::NZ_JH804746.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294325::NZ_JH804746.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804746.1All displayed genes belong to this local TCS context.
Neighborhood span39 618-41 844 nt2 227 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 618 nt41 844 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1344_RS03415GCF_000294325#HMPREF1344_RS03415
RROmpRCurrent focus
39 618-40 304 nt · Forward (+)
HMPREF1344_RS03420GCF_000294325#HMPREF1344_RS03420
HKClassic
40 315-41 844 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS05005Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301521
Simplified PFAM architecture for RROC_1301521
PFAM domain coverage: 184 / 228 aa (80.7%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[152-226]
- Domain count: 2
- Matched identifier: RROC_1301521
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 152-226 ; Trans_reg_C 152-226
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS05005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 801 · GCF_000294325
AssemblyASM29432v2 · Scaffoldhaploid
Genome composition2 793 034 bp · 37,5% GCEnterococcus faecalis R508
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key