1 Response_reg#1
6-114 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:6:5.74e-33:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1342_RS19370
Response regulator OmpR family
Enterococcus faecalis ERV85 · GCF_000294285
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294285#HMPREF1342_RS19370Stable P2CS identifier used across views.
GenomeGCF_000294285Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:152:1.44e-27:228:77:77- Raw architecture: Response_reg:6:5.74e-33:114:110:111#Trans_reg_C:152:1.44e-27:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294285::NZ_JH804932.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96062-98094Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1342_03251RefSeq proteinWP_002418973.1
Context group ID
GCF_000294285::NZ_JH804932.1::G00018Context members
HMPREF1342_RS19365HMPREF1342_RS19370
Partner locus tags
HMPREF1342_RS19365HMPREF1342_RS19370
Partner old locus tags
HMPREF1342_03250HMPREF1342_03251
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002418973.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1342_RS19370Primary locus identifier stored in the genes table.
Old locus tagHMPREF1342_03251Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804932.1Sequence record reported by the local genomic context database.
Genomic interval97 402-98 094 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 062-98 094 ntGCF_000294285::NZ_JH804932.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294285::NZ_JH804932.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804932.1All displayed genes belong to this local TCS context.
Neighborhood span96 062-98 094 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 062 nt98 094 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1342_RS19365GCF_000294285#HMPREF1342_RS19365
HKClassic
96 062-97 405 nt · Forward (+)
HMPREF1342_RS19370GCF_000294285#HMPREF1342_RS19370
RROmpRCurrent focus
97 402-98 094 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000294285#HMPREF1342_RS19370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1201217
Simplified PFAM architecture for RROC_1201217
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1201217
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000294285#HMPREF1342_RS19370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 799 · GCF_000294285
AssemblyASM29428v2 · Scaffoldhaploid
Genome composition3 129 469 bp · 37,5% GCEnterococcus faecalis ERV85
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key