1 HAMP#1
195-266 aa · 72 aa · 14.1% of protein
Raw token
HAMP:195:0.00000000000629:266:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1330_RS11475
Histidine kinase, Classic
Enterococcus faecalis ERV129 · GCF_000294045
ClassHKTypeClassicLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294045#HMPREF1330_RS11475Stable P2CS identifier used across views.
GenomeGCF_000294045Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 509 aa (48.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-336 aa · 67 aa · 13.2% of protein
Raw token
HisKA:270:0.00000000000000722:336:67:643 HATPase_c#3
384-493 aa · 110 aa · 21.6% of protein
Raw token
HATPase_c:384:1.23e-29:493:110:109- Raw architecture: HAMP:195:0.00000000000629:266:72:69#HisKA:270:0.00000000000000722:336:67:64#HATPase_c:384:1.23e-29:493:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294045::NZ_JH806248.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span620-2846Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1330_01588RefSeq proteinWP_002416339.1
Context group ID
GCF_000294045::NZ_JH806248.1::G00011Context members
HMPREF1330_RS11475HMPREF1330_RS11480
Partner locus tags
HMPREF1330_RS11475HMPREF1330_RS11480
Partner old locus tags
HMPREF1330_01588HMPREF1330_01589
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002416339.1Primary protein accession used for annex mappings.
UniProt accessionA0A2S7LY63Primary UniProt accession resolved in the annex database.
UniProt IDA0A2S7LY63_ENTFLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1330_RS11475Primary locus identifier stored in the genes table.
Old locus tagHMPREF1330_01588Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH806248.1Sequence record reported by the local genomic context database.
Genomic interval620-2 149 nt1 530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span620-2 846 ntGCF_000294045::NZ_JH806248.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294045::NZ_JH806248.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH806248.1All displayed genes belong to this local TCS context.
Neighborhood span620-2 846 nt2 227 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
620 nt2 846 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1330_RS11475GCF_000294045#HMPREF1330_RS11475
HKClassicCurrent focus
620-2 149 nt · Reverse (-)
HMPREF1330_RS11480GCF_000294045#HMPREF1330_RS11480
RROmpR
2 160-2 846 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000294025#HMPREF1329_RS18895Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1432614
Simplified PFAM architecture for HKOC_1432614
PFAM domain coverage: 372 / 509 aa (73.1%)
1 aa509 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[45-189] | HAMP[213-265] | HisKA[271-336] | HATPase_c[385-492]
- Domain count: 4
- Matched identifier: HKOC_1432614
- Positioned domains: ArlS_N 45-189 ; HAMP 213-265 ; HisKA 271-336 ; HATPase_c 385-492
Cluster members and taxonomy
Representative gene: GCF_000294025#HMPREF1329_RS18895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 787 · GCF_000294045
AssemblyASM29404v1 · Scaffoldhaploid
Genome composition3 157 953 bp · 37,5% GCEnterococcus faecalis ERV129
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key