1 Response_reg#1
3-113 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:3:2.59e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1330_RS08080
Response regulator OmpR family
Enterococcus faecalis ERV129 · GCF_000294045
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294045#HMPREF1330_RS08080Stable P2CS identifier used across views.
GenomeGCF_000294045Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 239 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-233 aa · 70 aa · 29.3% of protein
Raw token
Trans_reg_C:164:5.08e-37:233:72:77- Raw architecture: Response_reg:3:2.59e-28:113:111:111#Trans_reg_C:164:5.08e-37:233:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294045::NZ_JH806227.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108037-110225Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1330_00888RefSeq proteinWP_002381953.1
Context group ID
GCF_000294045::NZ_JH806227.1::G00006Context members
HMPREF1330_RS08080HMPREF1330_RS08085
Partner locus tags
HMPREF1330_RS08080HMPREF1330_RS08085
Partner old locus tags
HMPREF1330_00888HMPREF1330_00889
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002381953.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TKS5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TKS5_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1330_RS08080Primary locus identifier stored in the genes table.
Old locus tagHMPREF1330_00888Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH806227.1Sequence record reported by the local genomic context database.
Genomic interval108 037-108 756 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 037-110 225 ntGCF_000294045::NZ_JH806227.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294045::NZ_JH806227.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH806227.1All displayed genes belong to this local TCS context.
Neighborhood span108 037-110 225 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 037 nt110 225 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1330_RS08080GCF_000294045#HMPREF1330_RS08080
RROmpRCurrent focus
108 037-108 756 nt · Forward (+)
HMPREF1330_RS08085GCF_000294045#HMPREF1330_RS08085
HKClassic
108 756-110 225 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS06075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905297
Simplified PFAM architecture for RROC_0905297
PFAM domain coverage: 182 / 239 aa (76.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-114] | Trans_reg_C[164-233]
- Domain count: 2
- Matched identifier: RROC_0905297
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; Trans_reg_C 164-233 ; Trans_reg_C 164-233
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS06075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 787 · GCF_000294045
AssemblyASM29404v1 · Scaffoldhaploid
Genome composition3 157 953 bp · 37,5% GCEnterococcus faecalis ERV129
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key