1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:6.76e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1329_RS09325
Response regulator OmpR family
Enterococcus faecalis ERV116 · GCF_000294025
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294025#HMPREF1329_RS09325Stable P2CS identifier used across views.
GenomeGCF_000294025Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:148:1.72e-23:223:77:77- Raw architecture: Response_reg:5:6.76e-35:114:111:111#Trans_reg_C:148:1.72e-23:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294025::NZ_JH806046.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108468-111739Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1329_01179RefSeq proteinWP_002358569.1
Context group ID
GCF_000294025::NZ_JH806046.1::G00005Context members
HMPREF1329_RS09320HMPREF1329_RS09325
Partner locus tags
HMPREF1329_RS09320HMPREF1329_RS09325
Partner old locus tags
HMPREF1329_01178HMPREF1329_01179
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002358569.1Primary protein accession used for annex mappings.
UniProt accessionH7C7C5Primary UniProt accession resolved in the annex database.
UniProt IDH7C7C5_ENTFADisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1329_RS09325Primary locus identifier stored in the genes table.
Old locus tagHMPREF1329_01179Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH806046.1Sequence record reported by the local genomic context database.
Genomic interval111 050-111 739 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 468-111 739 ntGCF_000294025::NZ_JH806046.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294025::NZ_JH806046.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH806046.1All displayed genes belong to this local TCS context.
Neighborhood span108 468-111 739 nt3 272 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 468 nt111 739 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1329_RS09320GCF_000294025#HMPREF1329_RS09320
HKClassic
108 468-111 038 nt · Forward (+)
HMPREF1329_RS09325GCF_000294025#HMPREF1329_RS09325
RROmpRCurrent focus
111 050-111 739 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS02765Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246134
Simplified PFAM architecture for RROC_1246134
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1246134
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS02765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 786 · GCF_000294025
AssemblyASM29402v2 · Scaffoldhaploid
Genome composition3 069 746 bp · 37,5% GCEnterococcus faecalis ERV116
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key