1 HAMP#1
138-205 aa · 68 aa · 15.2% of protein
Raw token
HAMP:138:0.00000000000215:205:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1329_RS09220
Histidine kinase, Classic
Enterococcus faecalis ERV116 · GCF_000294025
ClassHKTypeClassicLength447 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294025#HMPREF1329_RS09220Stable P2CS identifier used across views.
GenomeGCF_000294025Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length447 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 447 aa (54.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
224-289 aa · 66 aa · 14.8% of protein
Raw token
HisKA:224:0.000000000286:289:66:643 HATPase_c#3
335-444 aa · 110 aa · 24.6% of protein
Raw token
HATPase_c:335:3.12e-17:444:111:109- Raw architecture: HAMP:138:0.00000000000215:205:68:69#HisKA:224:0.000000000286:289:66:64#HATPase_c:335:3.12e-17:444:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294025::NZ_JH806046.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88257-90262Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1329_01153RefSeq proteinWP_002382867.1
Context group ID
GCF_000294025::NZ_JH806046.1::G00004Context members
HMPREF1329_RS09215HMPREF1329_RS09220
Partner locus tags
HMPREF1329_RS09215HMPREF1329_RS09220
Partner old locus tags
HMPREF1329_01152HMPREF1329_01153
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002382867.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3GKQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3GKQ1_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1329_RS09220Primary locus identifier stored in the genes table.
Old locus tagHMPREF1329_01153Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH806046.1Sequence record reported by the local genomic context database.
Genomic interval88 919-90 262 nt1 344 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 257-90 262 ntGCF_000294025::NZ_JH806046.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294025::NZ_JH806046.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH806046.1All displayed genes belong to this local TCS context.
Neighborhood span88 257-90 262 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 257 nt90 262 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1329_RS09215GCF_000294025#HMPREF1329_RS09215
RROmpR
88 257-88 916 nt · Forward (+)
HMPREF1329_RS09220GCF_000294025#HMPREF1329_RS09220
HKClassicCurrent focus
88 919-90 262 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000159255#HMPREF0348_RS10545Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1999549
Simplified PFAM architecture for HKOC_1999549
PFAM domain coverage: 225 / 447 aa (50.3%)
1 aa447 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[155-204] | HisKA[224-288] | HATPase_c[335-444]
- Domain count: 3
- Matched identifier: HKOC_1999549
- Positioned domains: HAMP 155-204 ; HisKA 224-288 ; HATPase_c 335-444
Cluster members and taxonomy
Representative gene: GCF_000159255#HMPREF0348_RS10545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 786 · GCF_000294025
AssemblyASM29402v2 · Scaffoldhaploid
Genome composition3 069 746 bp · 37,5% GCEnterococcus faecalis ERV116
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key