1 Response_reg#1
5-112 aa · 108 aa · 49.3% of protein
Raw token
Response_reg:5:4.5e-33:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1328_RS13005
Response regulator OmpR family
Enterococcus faecalis ERV103 · GCF_000294005
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294005#HMPREF1328_RS13005Stable P2CS identifier used across views.
GenomeGCF_000294005Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 219 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 32.9% of protein
Raw token
Trans_reg_C:145:7.06e-30:216:77:77- Raw architecture: Response_reg:5:4.5e-33:112:109:111#Trans_reg_C:145:7.06e-30:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294005::NZ_JH805877.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88293-90298Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1328_01948RefSeq proteinWP_002416069.1
Context group ID
GCF_000294005::NZ_JH805877.1::G00009Context members
HMPREF1328_RS13005HMPREF1328_RS13010
Partner locus tags
HMPREF1328_RS13005HMPREF1328_RS13010
Partner old locus tags
HMPREF1328_01948HMPREF1328_01949
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002416069.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1328_RS13005Primary locus identifier stored in the genes table.
Old locus tagHMPREF1328_01948Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH805877.1Sequence record reported by the local genomic context database.
Genomic interval88 293-88 952 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 293-90 298 ntGCF_000294005::NZ_JH805877.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294005::NZ_JH805877.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH805877.1All displayed genes belong to this local TCS context.
Neighborhood span88 293-90 298 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 293 nt90 298 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1328_RS13005GCF_000294005#HMPREF1328_RS13005
RROmpRCurrent focus
88 293-88 952 nt · Forward (+)
HMPREF1328_RS13010GCF_000294005#HMPREF1328_RS13010
HKClassic
88 955-90 298 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000294005#HMPREF1328_RS13005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1768397
Simplified PFAM architecture for RROC_1768397
PFAM domain coverage: 181 / 219 aa (82.6%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1768397
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_000294005#HMPREF1328_RS13005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 785 · GCF_000294005
AssemblyASM29400v2 · Scaffoldhaploid
Genome composition3 064 819 bp · 37,5% GCEnterococcus faecalis ERV103
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key