1 Response_reg#1
4-112 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:4:3.05e-38:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1328_RS06680
Response regulator OmpR family
Enterococcus faecalis ERV103 · GCF_000294005
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294005#HMPREF1328_RS06680Stable P2CS identifier used across views.
GenomeGCF_000294005Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 236 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:155:4.91e-36:231:77:77- Raw architecture: Response_reg:4:3.05e-38:112:109:111#Trans_reg_C:155:4.91e-36:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294005::NZ_JH805854.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span172868-175350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1328_00629RefSeq proteinWP_002357427.1
Context group ID
GCF_000294005::NZ_JH805854.1::G00005Context members
HMPREF1328_RS06675HMPREF1328_RS06680
Partner locus tags
HMPREF1328_RS06675HMPREF1328_RS06680
Partner old locus tags
HMPREF1328_00628HMPREF1328_00629
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002357427.1Primary protein accession used for annex mappings.
UniProt accessionQ834F2Primary UniProt accession resolved in the annex database.
UniProt IDQ834F2_ENTFADisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1328_RS06680Primary locus identifier stored in the genes table.
Old locus tagHMPREF1328_00629Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH805854.1Sequence record reported by the local genomic context database.
Genomic interval174 640-175 350 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span172 868-175 350 ntGCF_000294005::NZ_JH805854.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294005::NZ_JH805854.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH805854.1All displayed genes belong to this local TCS context.
Neighborhood span172 868-175 350 nt2 483 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
172 868 nt175 350 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1328_RS06675GCF_000294005#HMPREF1328_RS06675
HKClassic
172 868-174 643 nt · Reverse (-)
HMPREF1328_RS06680GCF_000294005#HMPREF1328_RS06680
RROmpRCurrent focus
174 640-175 350 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS08185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988187
Simplified PFAM architecture for RROC_0988187
PFAM domain coverage: 186 / 236 aa (78.8%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0988187
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS08185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 785 · GCF_000294005
AssemblyASM29400v2 · Scaffoldhaploid
Genome composition3 064 819 bp · 37,5% GCEnterococcus faecalis ERV103
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key