1 HAMP#1
195-266 aa · 72 aa · 14.2% of protein
Raw token
HAMP:195:0.00000000000679:266:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1328_RS0103645
Histidine kinase, Classic
Enterococcus faecalis ERV103 · GCF_000294005
ClassHKTypeClassicLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000294005#HMPREF1328_RS0103645Stable P2CS identifier used across views.
GenomeGCF_000294005Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 507 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-336 aa · 67 aa · 13.2% of protein
Raw token
HisKA:270:0.00000000000000719:336:67:643 HATPase_c#3
384-493 aa · 110 aa · 21.7% of protein
Raw token
HATPase_c:384:1.31e-29:493:110:109- Raw architecture: HAMP:195:0.00000000000679:266:72:69#HisKA:270:0.00000000000000719:336:67:64#HATPase_c:384:1.31e-29:493:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000294005::NZ_JH805894.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span533-2751Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1328_03048RefSeq proteinWP_002416184.1
Context group ID
GCF_000294005::NZ_JH805894.1::G00017Context members
HMPREF1328_RS0103645HMPREF1328_RS18275
Partner locus tags
HMPREF1328_RS0103645HMPREF1328_RS18275
Partner old locus tags
HMPREF1328_03048HMPREF1328_03049
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002416184.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1328_RS0103645Primary locus identifier stored in the genes table.
Old locus tagHMPREF1328_03048Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH805894.1Sequence record reported by the local genomic context database.
Genomic interval533-2 054 nt1 522 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span533-2 751 ntGCF_000294005::NZ_JH805894.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000294005::NZ_JH805894.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH805894.1All displayed genes belong to this local TCS context.
Neighborhood span533-2 751 nt2 219 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
533 nt2 751 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1328_RS0103645GCF_000294005#HMPREF1328_RS0103645
HKClassicCurrent focus
533-2 054 nt · Reverse (-)
HMPREF1328_RS18275GCF_000294005#HMPREF1328_RS18275
RROmpR
2 065-2 751 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000294025#HMPREF1329_RS18895Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1432614
Simplified PFAM architecture for HKOC_1432614
PFAM domain coverage: 372 / 509 aa (73.1%)
1 aa509 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[45-189] | HAMP[213-265] | HisKA[271-336] | HATPase_c[385-492]
- Domain count: 4
- Matched identifier: HKOC_1432614
- Positioned domains: ArlS_N 45-189 ; HAMP 213-265 ; HisKA 271-336 ; HATPase_c 385-492
Cluster members and taxonomy
Representative gene: GCF_000294025#HMPREF1329_RS18895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 785 · GCF_000294005
AssemblyASM29400v2 · Scaffoldhaploid
Genome composition3 064 819 bp · 37,5% GCEnterococcus faecalis ERV103
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key