1 Response_reg#1
4-107 aa · 104 aa · 40.5% of protein
Raw token
Response_reg:4:2.74e-25:107:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG3_RS27730
Response regulator OmpR family
Bacillus cereus HuA2-1 · GCF_000293705
ClassRRTypeOmpRLength257 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293705#IG3_RS27730Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 257 aa (58.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-202 aa · 45 aa · 17.5% of protein
Raw token
Trans_reg_C:158:0.0000215:202:45:77- Raw architecture: Response_reg:4:2.74e-25:107:106:111#Trans_reg_C:158:0.0000215:202:45:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293705::NZ_JH804675.1::G00075
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span126330-130039Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG3_05587RefSeq proteinWP_002139443.1
Context group ID
GCF_000293705::NZ_JH804675.1::G00075Context members
IG3_RS27730IG3_RS27735
Partner locus tags
IG3_RS27730IG3_RS27735
Partner old locus tags
IG3_05587IG3_05588
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002139443.1Primary protein accession used for annex mappings.
UniProt accessionJ9BNC0Primary UniProt accession resolved in the annex database.
UniProt IDJ9BNC0_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG3_RS27730Primary locus identifier stored in the genes table.
Old locus tagIG3_05587Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804675.1Sequence record reported by the local genomic context database.
Genomic interval126 330-127 103 nt774 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span126 330-130 039 ntGCF_000293705::NZ_JH804675.1::G00075
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293705::NZ_JH804675.1::G00075Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804675.1All displayed genes belong to this local TCS context.
Neighborhood span126 330-130 039 nt3 710 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 330 nt130 039 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IG3_RS27730GCF_000293705#IG3_RS27730
RROmpRCurrent focus
126 330-127 103 nt · Reverse (-)
IG3_RS27735GCF_000293705#IG3_RS27735
HKHybrid
127 103-130 039 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS27730The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0667228
Simplified PFAM architecture for RROC_0667228
PFAM domain coverage: 106 / 257 aa (41.2%)
1 aa257 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-109]
- Domain count: 1
- Matched identifier: RROC_0667228
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS27730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 201 · GCF_000293705
AssemblyBaci_cere_HuA2-1_V1 · Scaffoldhaploid
Genome composition6 465 275 bp · 35,0% GCBacillus cereus HuA2-1
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key