1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:6.7e-42:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG3_RS27010
Response regulator OmpR family
Bacillus cereus HuA2-1 · GCF_000293705
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293705#IG3_RS27010Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:152:5.99e-33:228:77:77- Raw architecture: Response_reg:5:6.7e-42:114:111:111#Trans_reg_C:152:5.99e-33:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293705::NZ_JH804674.1::G00071
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span369447-371206Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG3_05450RefSeq proteinWP_002204232.1
Context group ID
GCF_000293705::NZ_JH804674.1::G00071Context members
IG3_RS27010IG3_RS27015
Partner locus tags
IG3_RS27010IG3_RS27015
Partner old locus tags
IG3_05450IG3_05451
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002204232.1Primary protein accession used for annex mappings.
UniProt accessionJ9BPN5Primary UniProt accession resolved in the annex database.
UniProt IDJ9BPN5_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG3_RS27010Primary locus identifier stored in the genes table.
Old locus tagIG3_05450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804674.1Sequence record reported by the local genomic context database.
Genomic interval369 447-370 133 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span369 447-371 206 ntGCF_000293705::NZ_JH804674.1::G00071
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293705::NZ_JH804674.1::G00071Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804674.1All displayed genes belong to this local TCS context.
Neighborhood span369 447-371 206 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
369 447 nt371 206 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IG3_RS27010GCF_000293705#IG3_RS27010
RROmpRCurrent focus
369 447-370 133 nt · Forward (+)
IG3_RS27015GCF_000293705#IG3_RS27015
HKClassic
370 130-371 206 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS27010The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1303374
Simplified PFAM architecture for RROC_1303374
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1303374
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS27010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 201 · GCF_000293705
AssemblyBaci_cere_HuA2-1_V1 · Scaffoldhaploid
Genome composition6 465 275 bp · 35,0% GCBacillus cereus HuA2-1
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key