1 HAMP#1
51-129 aa · 79 aa · 22.1% of protein
Raw token
HAMP:51:0.00000000635:129:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG3_RS06925
Histidine kinase, Classic
Bacillus cereus HuA2-1 · GCF_000293705
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293705#IG3_RS06925Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 357 aa (71.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-199 aa · 67 aa · 18.8% of protein
Raw token
HisKA:133:0.0000000000000399:199:67:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:2.33e-32:352:110:109- Raw architecture: HAMP:51:0.00000000635:129:79:69#HisKA:133:0.0000000000000399:199:67:64#HATPase_c:243:2.33e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293705::NZ_JH804672.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1423533-1425280Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG3_01378RefSeq proteinWP_002135757.1
Context group ID
GCF_000293705::NZ_JH804672.1::G00024Context members
IG3_RS06920IG3_RS06925
Partner locus tags
IG3_RS06920IG3_RS06925
Partner old locus tags
IG3_01377IG3_01378
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002135757.1Primary protein accession used for annex mappings.
UniProt accessionA0A3D9V2B1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3D9V2B1_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG3_RS06925Primary locus identifier stored in the genes table.
Old locus tagIG3_01378Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804672.1Sequence record reported by the local genomic context database.
Genomic interval1 424 207-1 425 280 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 423 533-1 425 280 ntGCF_000293705::NZ_JH804672.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293705::NZ_JH804672.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804672.1All displayed genes belong to this local TCS context.
Neighborhood span1 423 533-1 425 280 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 423 533 nt1 425 280 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IG3_RS06920GCF_000293705#IG3_RS06920
RROmpR
1 423 533-1 424 210 nt · Forward (+)
IG3_RS06925GCF_000293705#IG3_RS06925
HKClassicCurrent focus
1 424 207-1 425 280 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS06925The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765172
Simplified PFAM architecture for HKOC_2765172
PFAM domain coverage: 176 / 357 aa (49.3%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2765172
- Positioned domains: HisKA 133-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS06925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 201 · GCF_000293705
AssemblyBaci_cere_HuA2-1_V1 · Scaffoldhaploid
Genome composition6 465 275 bp · 35,0% GCBacillus cereus HuA2-1
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key