1 Response_reg#1
7-116 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:7:2.24e-29:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG3_RS06590
Response regulator OmpR family
Bacillus cereus HuA2-1 · GCF_000293705
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000293705#IG3_RS06590Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:156:1.13e-29:232:77:77- Raw architecture: Response_reg:7:2.24e-29:116:111:111#Trans_reg_C:156:1.13e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000293705::NZ_JH804672.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1351558-1352259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG3_01308RefSeq proteinWP_002135691.1
Context group ID
GCF_000293705::NZ_JH804672.1::G00022Context members
IG3_RS06590
Partner locus tags
IG3_RS06590
Partner old locus tags
IG3_01308
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002135691.1Primary protein accession used for annex mappings.
UniProt accessionJ9C8Q1Primary UniProt accession resolved in the annex database.
UniProt IDJ9C8Q1_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG3_RS06590Primary locus identifier stored in the genes table.
Old locus tagIG3_01308Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804672.1Sequence record reported by the local genomic context database.
Genomic interval1 351 558-1 352 259 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 351 558-1 352 259 ntGCF_000293705::NZ_JH804672.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293705::NZ_JH804672.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804672.1All displayed genes belong to this local TCS context.
Neighborhood span1 351 558-1 352 259 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 351 558 nt1 352 259 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IG3_RS06590GCF_000293705#IG3_RS06590
RROmpRCurrent focus
1 351 558-1 352 259 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS06590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081745
Simplified PFAM architecture for RROC_1081745
PFAM domain coverage: 184 / 233 aa (79.0%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[158-232]
- Domain count: 2
- Matched identifier: RROC_1081745
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; Trans_reg_C 158-232 ; Trans_reg_C 158-232
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS06590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 201 · GCF_000293705
AssemblyBaci_cere_HuA2-1_V1 · Scaffoldhaploid
Genome composition6 465 275 bp · 35,0% GCBacillus cereus HuA2-1
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key