1 HAMP#1
54-123 aa · 70 aa · 19.4% of protein
Raw token
HAMP:54:0.0000000000539:123:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG3_RS06580
Histidine kinase, Classic
Bacillus cereus HuA2-1 · GCF_000293705
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293705#IG3_RS06580Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 361 aa (67.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation3 items
2 HisKA#2
134-195 aa · 62 aa · 17.2% of protein
Raw token
HisKA:134:0.0000000000002:195:62:643 HATPase_c#3
248-358 aa · 111 aa · 30.7% of protein
Raw token
HATPase_c:248:2.78e-19:358:112:109- Raw architecture: HAMP:54:0.0000000000539:123:70:69#HisKA:134:0.0000000000002:195:62:64#HATPase_c:248:2.78e-19:358:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293705::NZ_JH804672.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1347211-1348984Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG3_01306RefSeq proteinWP_002135687.1
Context group ID
GCF_000293705::NZ_JH804672.1::G00021Context members
IG3_RS06575IG3_RS06580
Partner locus tags
IG3_RS06575IG3_RS06580
Partner old locus tags
IG3_01305IG3_01306
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002135687.1Primary protein accession used for annex mappings.
UniProt accessionJ9C9X6Primary UniProt accession resolved in the annex database.
UniProt IDJ9C9X6_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG3_RS06580Primary locus identifier stored in the genes table.
Old locus tagIG3_01306Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804672.1Sequence record reported by the local genomic context database.
Genomic interval1 347 899-1 348 984 nt1 086 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 347 211-1 348 984 ntGCF_000293705::NZ_JH804672.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293705::NZ_JH804672.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804672.1All displayed genes belong to this local TCS context.
Neighborhood span1 347 211-1 348 984 nt1 774 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 347 211 nt1 348 984 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IG3_RS06575GCF_000293705#IG3_RS06575
RROmpR
1 347 211-1 347 909 nt · Forward (+)
IG3_RS06580GCF_000293705#IG3_RS06580
HKClassicCurrent focus
1 347 899-1 348 984 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS06580The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2740715
Simplified PFAM architecture for HKOC_2740715
PFAM domain coverage: 220 / 361 aa (60.9%)
1 aa361 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-122] | HisKA[134-195] | HATPase_c[249-356]
- Domain count: 3
- Matched identifier: HKOC_2740715
- Positioned domains: HAMP 73-122 ; HisKA 134-195 ; HATPase_c 249-356
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS06580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 201 · GCF_000293705
AssemblyBaci_cere_HuA2-1_V1 · Scaffoldhaploid
Genome composition6 465 275 bp · 35,0% GCBacillus cereus HuA2-1
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key