1 HAMP#1
289-357 aa · 69 aa · 11.4% of protein
Raw token
HAMP:289:0.0000000000146:357:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG3_RS04475
Histidine kinase, Classic
Bacillus cereus HuA2-1 · GCF_000293705
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000293705#IG3_RS04475Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 605 aa (37.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation3 items
2 HisKA#2
383-446 aa · 64 aa · 10.6% of protein
Raw token
HisKA:383:4.4e-17:446:64:643 HATPase_c#3
491-582 aa · 92 aa · 15.2% of protein
Raw token
HATPase_c:491:1.46e-23:582:92:109- Raw architecture: HAMP:289:0.0000000000146:357:69:69#HisKA:383:4.4e-17:446:64:64#HATPase_c:491:1.46e-23:582:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000293705::NZ_JH804672.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span889546-891363Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG3_00878RefSeq proteinWP_002135235.1
Context group ID
GCF_000293705::NZ_JH804672.1::G00014Context members
IG3_RS04475
Partner locus tags
IG3_RS04475
Partner old locus tags
IG3_00878
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002135235.1Primary protein accession used for annex mappings.
UniProt accessionJ9CQT7Primary UniProt accession resolved in the annex database.
UniProt IDJ9CQT7_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG3_RS04475Primary locus identifier stored in the genes table.
Old locus tagIG3_00878Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804672.1Sequence record reported by the local genomic context database.
Genomic interval889 546-891 363 nt1 818 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span889 546-891 363 ntGCF_000293705::NZ_JH804672.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293705::NZ_JH804672.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804672.1All displayed genes belong to this local TCS context.
Neighborhood span889 546-891 363 nt1 818 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
889 546 nt891 363 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IG3_RS04475GCF_000293705#IG3_RS04475
HKClassicCurrent focus
889 546-891 363 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS04475The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1028473
Simplified PFAM architecture for HKOC_1028473
PFAM domain coverage: 211 / 605 aa (34.9%)
1 aa605 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[307-356] | HisKA[383-446] | HATPase_c[493-589]
- Domain count: 3
- Matched identifier: HKOC_1028473
- Positioned domains: HAMP 307-356 ; HisKA 383-446 ; HATPase_c 493-589
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS04475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 201 · GCF_000293705
AssemblyBaci_cere_HuA2-1_V1 · Scaffoldhaploid
Genome composition6 465 275 bp · 35,0% GCBacillus cereus HuA2-1
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key