1 Response_reg#1
3-113 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:3:1.63e-40:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEU_RS26810
Response regulator OmpR family
Bacillus mycoides · GCF_000293605
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293605#IEU_RS26810Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 32.3% of protein
Raw token
Trans_reg_C:145:1.88e-23:218:75:77- Raw architecture: Response_reg:3:1.63e-40:113:111:111#Trans_reg_C:145:1.88e-23:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293605::NZ_JH804643.1::G00070
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47058-48915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEU_05359RefSeq proteinWP_002130340.1
Context group ID
GCF_000293605::NZ_JH804643.1::G00070Context members
IEU_RS26805IEU_RS26810
Partner locus tags
IEU_RS26805IEU_RS26810
Partner old locus tags
IEU_05358IEU_05359
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002130340.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEU_RS26810Primary locus identifier stored in the genes table.
Old locus tagIEU_05359Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804643.1Sequence record reported by the local genomic context database.
Genomic interval48 226-48 915 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 058-48 915 ntGCF_000293605::NZ_JH804643.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293605::NZ_JH804643.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804643.1All displayed genes belong to this local TCS context.
Neighborhood span47 058-48 915 nt1 858 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 058 nt48 915 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEU_RS26805GCF_000293605#IEU_RS26805
HKClassic
47 058-48 098 nt · Reverse (-)
IEU_RS26810GCF_000293605#IEU_RS26810
RROmpRCurrent focus
48 226-48 915 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291315#IEY_RS27250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1248197
Simplified PFAM architecture for RROC_1248197
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1248197
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_000291315#IEY_RS27250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000293605
AssemblyBaci_cere_BtB2-4_V1 · Scaffoldhaploid
Genome composition5 661 976 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key