1 CheW#1
17-149 aa · 133 aa · 44.0% of protein
Raw token
CheW:17:1.63e-39:149:134:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEM_RS18220
Response regulator CheV family
Bacillus cereus BAG6O-2 · GCF_000293545
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000293545#IEM_RS18220Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-298 aa · 123 aa · 40.7% of protein
Raw token
Response_reg:176:1.21e-17:298:124:111- Raw architecture: CheW:17:1.63e-39:149:134:138#Response_reg:176:1.21e-17:298:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000293545::NZ_JH804629.1::G00041
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span637951-638859Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEM_03677RefSeq proteinWP_002201040.1
Context group ID
GCF_000293545::NZ_JH804629.1::G00041Context members
IEM_RS18220
Partner locus tags
IEM_RS18220
Partner old locus tags
IEM_03677
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002201040.1Primary protein accession used for annex mappings.
UniProt accessionA0A1C4C426Primary UniProt accession resolved in the annex database.
UniProt IDA0A1C4C426_BACMYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEM_RS18220Primary locus identifier stored in the genes table.
Old locus tagIEM_03677Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804629.1Sequence record reported by the local genomic context database.
Genomic interval637 951-638 859 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span637 951-638 859 ntGCF_000293545::NZ_JH804629.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293545::NZ_JH804629.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804629.1All displayed genes belong to this local TCS context.
Neighborhood span637 951-638 859 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
637 951 nt638 859 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IEM_RS18220GCF_000293545#IEM_RS18220
RRCheVCurrent focus
637 951-638 859 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291295#IEE_RS17515Use this link to inspect the representative gene detail.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0568571
Simplified PFAM architecture for RROC_0568571
PFAM domain coverage: 252 / 302 aa (83.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-149] | Response_reg[176-295]
- Domain count: 2
- Matched identifier: RROC_0568571
- Positioned domains: CheW 18-149 ; CheW 18-149 ; Response_reg 176-295 ; Response_reg 176-295
Cluster members and taxonomy
Representative gene: GCF_000291295#IEE_RS17515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 193 · GCF_000293545
AssemblyBaci_cere_BAG60-2_G13207_V1 · Scaffoldhaploid
Genome composition5 747 228 bp · 35,0% GCBacillus cereus BAG6O-2
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key