1 HAMP#1
50-119 aa · 70 aa · 19.9% of protein
Raw token
HAMP:50:0.000000000000473:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEM_RS17405
Histidine kinase, Classic
Bacillus cereus BAG6O-2 · GCF_000293545
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293545#IEM_RS17405Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 352 aa (68.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.6% of protein
Raw token
HisKA:130:0.00000000000035:191:62:643 HATPase_c#3
243-350 aa · 108 aa · 30.7% of protein
Raw token
HATPase_c:243:2.64e-25:350:109:109- Raw architecture: HAMP:50:0.000000000000473:119:70:69#HisKA:130:0.00000000000035:191:62:64#HATPase_c:243:2.64e-25:350:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293545::NZ_JH804629.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span478765-480511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEM_03513RefSeq proteinWP_002202420.1
Context group ID
GCF_000293545::NZ_JH804629.1::G00038Context members
IEM_RS17405IEM_RS17410
Partner locus tags
IEM_RS17405IEM_RS17410
Partner old locus tags
IEM_03513IEM_03514
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002202420.1Primary protein accession used for annex mappings.
UniProt accessionA0A1C4CCG2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1C4CCG2_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEM_RS17405Primary locus identifier stored in the genes table.
Old locus tagIEM_03513Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804629.1Sequence record reported by the local genomic context database.
Genomic interval478 765-479 823 nt1 059 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span478 765-480 511 ntGCF_000293545::NZ_JH804629.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293545::NZ_JH804629.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804629.1All displayed genes belong to this local TCS context.
Neighborhood span478 765-480 511 nt1 747 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
478 765 nt480 511 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEM_RS17405GCF_000293545#IEM_RS17405
HKClassicCurrent focus
478 765-479 823 nt · Reverse (-)
IEM_RS17410GCF_000293545#IEM_RS17410
RROmpR
479 813-480 511 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS17405The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2788811
Simplified PFAM architecture for HKOC_2788811
PFAM domain coverage: 224 / 352 aa (63.6%)
1 aa352 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-191] | HATPase_c[243-351]
- Domain count: 3
- Matched identifier: HKOC_2788811
- Positioned domains: HAMP 67-119 ; HisKA 130-191 ; HATPase_c 243-351
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS17405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 193 · GCF_000293545
AssemblyBaci_cere_BAG60-2_G13207_V1 · Scaffoldhaploid
Genome composition5 747 228 bp · 35,0% GCBacillus cereus BAG6O-2
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key