1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:2.08e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEM_RS11540
Response regulator OmpR family
Bacillus cereus BAG6O-2 · GCF_000293545
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293545#IEM_RS11540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:1.62e-34:229:77:77- Raw architecture: Response_reg:6:2.08e-35:115:111:111#Trans_reg_C:153:1.62e-34:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293545::NZ_JH804628.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2225660-2227853Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEM_02340RefSeq proteinWP_002112500.1
Context group ID
GCF_000293545::NZ_JH804628.1::G00023Context members
IEM_RS11535IEM_RS11540
Partner locus tags
IEM_RS11535IEM_RS11540
Partner old locus tags
IEM_02339IEM_02340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002112500.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEM_RS11540Primary locus identifier stored in the genes table.
Old locus tagIEM_02340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804628.1Sequence record reported by the local genomic context database.
Genomic interval2 227 152-2 227 853 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 225 660-2 227 853 ntGCF_000293545::NZ_JH804628.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293545::NZ_JH804628.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804628.1All displayed genes belong to this local TCS context.
Neighborhood span2 225 660-2 227 853 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 225 660 nt2 227 853 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEM_RS11535GCF_000293545#IEM_RS11535
HKClassic
2 225 660-2 227 168 nt · Reverse (-)
IEM_RS11540GCF_000293545#IEM_RS11540
RROmpRCurrent focus
2 227 152-2 227 853 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS11540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081744
Simplified PFAM architecture for RROC_1081744
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1081744
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS11540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 193 · GCF_000293545
AssemblyBaci_cere_BAG60-2_G13207_V1 · Scaffoldhaploid
Genome composition5 747 228 bp · 35,0% GCBacillus cereus BAG6O-2
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key