1 HAMP#1
205-269 aa · 65 aa · 12.9% of protein
Raw token
HAMP:205:0.0000000505:269:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEM_RS11535
Histidine kinase, Classic
Bacillus cereus BAG6O-2 · GCF_000293545
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293545#IEM_RS11535Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 502 aa (48.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:0.0000000000000084:347:68:643 HATPase_c#3
394-501 aa · 108 aa · 21.5% of protein
Raw token
HATPase_c:394:5.96e-21:501:109:109- Raw architecture: HAMP:205:0.0000000505:269:68:69#HisKA:280:0.0000000000000084:347:68:64#HATPase_c:394:5.96e-21:501:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293545::NZ_JH804628.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2225660-2227853Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEM_02339RefSeq proteinWP_002112499.1
Context group ID
GCF_000293545::NZ_JH804628.1::G00023Context members
IEM_RS11535IEM_RS11540
Partner locus tags
IEM_RS11535IEM_RS11540
Partner old locus tags
IEM_02339IEM_02340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002112499.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEM_RS11535Primary locus identifier stored in the genes table.
Old locus tagIEM_02339Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804628.1Sequence record reported by the local genomic context database.
Genomic interval2 225 660-2 227 168 nt1 509 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 225 660-2 227 853 ntGCF_000293545::NZ_JH804628.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293545::NZ_JH804628.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804628.1All displayed genes belong to this local TCS context.
Neighborhood span2 225 660-2 227 853 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 225 660 nt2 227 853 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEM_RS11535GCF_000293545#IEM_RS11535
HKClassicCurrent focus
2 225 660-2 227 168 nt · Reverse (-)
IEM_RS11540GCF_000293545#IEM_RS11540
RROmpR
2 227 152-2 227 853 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS11535The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1463994
Simplified PFAM architecture for HKOC_1463994
PFAM domain coverage: 218 / 502 aa (43.4%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-268] | HisKA[280-346] | HATPase_c[394-500]
- Domain count: 3
- Matched identifier: HKOC_1463994
- Positioned domains: HAMP 225-268 ; HisKA 280-346 ; HATPase_c 394-500
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS11535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 193 · GCF_000293545
AssemblyBaci_cere_BAG60-2_G13207_V1 · Scaffoldhaploid
Genome composition5 747 228 bp · 35,0% GCBacillus cereus BAG6O-2
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key